Table of Contents / Awesome |
| Awesome Bioinformatics | 3,232 | over 2 years ago | |
| Awesome Biological Image Analysis | 126 | almost 2 years ago | |
| Awesome Multi-Omics | 741 | over 2 years ago | |
| Awesome Single-Cell | 3,246 | almost 2 years ago | |
| Awesome-Computational-Neuroscience | 757 | about 2 years ago | |
| Awesome Cancer Variant Databases | 297 | almost 3 years ago | |
| Awesome DeepBio | 1,892 | almost 5 years ago | |
| Awesome Nextflow | 575 | almost 4 years ago | |
| Awesome Reproducible Research | 326 | almost 2 years ago | |
| Awesome Synthetic Biology | 189 | almost 4 years ago | |
Table of Contents / Lists |
| Biotools by John Didion | 590 | about 3 years ago | |
Table of Contents / General Reading |
| The Epic History of Biology by Serafini | | | |
| The Selfish Gene by Richard Dawkins | | | |
| What is Life by Erwin Schrodinger | | | (Public Domain) |
| The Immortal Life of Henrietta Lacks by Rebecca Skloot | | | |
| The Red Queen: Sex and the Evolution of Human Nature by Matt Ridley | | | |
| The Richness of Life by Stephen Jay Gould | | | |
| Guns, Germs, and Steel: The Fates of Human Societies by Jared Diamond | | | |
| The Ascent of Man by Jacob Bronowski | | | |
| Power, Sex and Suicide: Mitochondria and the Meaning of Life by Nick
Lane | | | |
| Emperor of all Maladies by Siddhartha Mukherjee | | | |
| The Gene by Siddhartha Mukherjee | | | |
| The Eighth Day of Creation by H. F. Judson | | | |
| The Human Zoo by Desmond Morris | | | |
| The Equation That Couldn't be Solved by Mario Livio | | | |
| The Golden Ratio by Mario Livio | | | |
| The Complexity Paradox by Kenneth Mossman | | | |
| The Vital Question by Nick Lane | | | |
| On Growth and Form by D'Arcy Wentworth Thomsom | | | |
| The Big Questions: Evolution by Francisco Ayala | | | |
| The Making of a Fly by Peter Lawrence | | | |
| Molecular Machines in Biology by Joachim Frank | | | |
| Cell Motility from Molecules to Organisms by Ridley and Peckham | | | |
| Random Walks in Biology by Howard Berg | | | |
| Elephants on Acids and Other Bizarre Experiments by Alex Boese | | | |
| Sapiens: A Brief History of Humankind by Yuval Noah Harari | | | |
| Evolving Ourselves: Redesigning the Future of Humanity--One Gene at a Time | | | |
| The Botany of Desire by Michael Pollan | | | |
| Silent Spring by Rachel Carlson | | | |
| Soft Matter: the stuff that dreams are made of by Roberto Piazza | | | |
| Life on Earth and The Living Planet by David Attenborough | | | |
| The Secret Life of The Brain by PBS | | | |
Table of Contents / General Biology |
| Ancestors in Our Genome by Eugene E. Harris | | | |
| A Cartoon Guide to Genetics by Gonick and Wheelis | | | |
| Campbell Biology | | | |
| Clinical Microbiology Made Ridiculously Simple | | | |
| The Biology of Cancer by Weinberg | | | |
| The Deeper Genome by John Parrington | | | |
| The Developing Genome: An Introduction to Behavioral Epigenetics by Davis S. Moore | | | |
| The Systems View of Life: A Unifying Vision | | | |
| Scitable by Nature Education | | | |
| The Many Phases of the Matter by Ganeshan Venkataraman | | | |
| The Shaping of Life by Lionel G. Harrison | | | |
| The Machinery of Life by David Goodsell | | | |
Table of Contents / Biochemistry |
| Biochemistry by Berg | | | |
| Principles of Biochemistry by Lehninger | | | |
Table of Contents / Biophysics |
| Feynman Lectures On Computation by Richard Feynman | | | |
| Physics in Molecular Biology by Kim Sneppen | | | |
| Physics of Living Systems by Fabrizio Cleri | | | |
Table of Contents / Bioprocess Engineering |
| Bioprocess Engineering Principles by Pauline M. Doran | | | |
Table of Contents / Evolution |
| Arrival of the Fittest: Solving Evolution's Greatest Puzzle by Andreas Wagner | | | |
| Computational Molecular Evolution by Ziheng Yang | | | |
| Fundamentals of Molecular Evolution by Dan Graur | | | |
| Human Evolutionary Genetics by Jobling et al | | | |
| Life Ascending: The Ten Great Inventions of Evolution by Nick Lane | | | |
| Robustness and Evolvability in Living Systems by Andreas Wagner | | | |
| Mathematical Ecology of Populations and Ecosystems by John Pastor | | | |
| Man and His Future, A Ciba Foundation Volume by Wolstenholme, G. E. W. | | | |
| The Origins of Evolutionary Innovations by Andreas Wagner | | | |
| The Growth of Biological Thought | | | |
Table of Contents / Molecular Biology |
| What are the best papers in Molecular Biology? | | | : |
| Molecular Biology of the Cell by Bruce Alberts | | | |
| Molecular Biology of Gene by Watson et al | | | |
| Molecular Cell Biology by Lodish | | | |
| Gene Cloning and DNA Analysis: An Introduction by T. A. Brown | | | |
| Lewin's GENES XII by Krebs et al | | | |
Table of Contents / Neuroscience |
| Awesome-Computational-Neuroscience | 757 | about 2 years ago | : |
| Principles of Neural Science by Kandel and Schwartz | | | |
| Theoretical Neuroscience by Dayan and Abbott | | | |
Table of Contents / Physical Biology |
| Pedagogical/review papers on Physical Biology (60+ papers) | | | : |
| Cell Biology by The Numbers | | | ( ) |
| Physical Biology of the Cell by Phillips et al | | | |
Table of Contents / Immunology |
| How the Immune System Works? | | | |
| Janeway's Immunobiology | | | |
| Kuby Immunology | | | |
Table of Contents / Omics |
| http://www.pnas.org/lookup/doi/10.1073/pnas.042692499 | | | Waterston, R. H. (2002). . Proceedings
of the National Academy of Sciences, 99(6), 3712–3716 |
| http://www.pnas.org/cgi/doi/10.1073/pnas.092136699 | | | Myers, E. W. (2002).
Proceedings of the National Academy of Sciences, 99(7), 4145–4146 |
| http://linkinghub.elsevier.com/retrieve/pii/S0092867412005284 | | | Nik-Zainal, S., Alexandrov, L. B., Wedge, D. C., Van Loo, P., Greenman, C.
D., Raine, K., Jones, D., et al. (2012). Cell, 149(5), 979–993 |
| http://www.nature.com/doifinder/10.1038/nature11232 | | | Thurman, R. E., Rynes, E., Humbert, R., Vierstra, J., Maurano, M. T., Haugen,
E., Sheffield, N. C., et al. (2012). . Nature, 489(7414), 75–82 |
| http://www.nature.com/doifinder/10.1038/nrg2484 | | | Wang, Z., Gerstein, M. & Snyder, M. . Nat. Rev. Genet. 10, 57–63 (2009) |
Table of Contents / Systems Biology and Genetic Networks |
| An Introduction to Systems Biology by Uri Alon | | | |
| A First Course in Systems Biology by E. Voit | | | |
| A Genetic Switch by Mark Ptashne | | | |
| Lectures from Systems Biology Course by Uri Alon | | | |
| Lectures from Systems Biology: Constraint-based Reconstruction and Analysis by B. Palsson | | | |
| Life: An Introduction to Complex Systems Biology by Kunihiko Kaneko | | | |
| Mathematical Modeling in Systems Biology by Brian Ingalls | | | |
| Systems Biology: Properties of Reconstructed Networks by B. Palsson | | | |
Table of Contents / Deep Learning |
| Deep Learning in Computational Biology | 185 | over 10 years ago | List: |
| Deep Learning in Neuronal Image Analysis | 151 | over 8 years ago | List: |
| Deep Learning in Biology | 2,026 | about 2 years ago | List: |
| Deep Learning Applications in Computational Biology | 1,892 | almost 5 years ago | : |
Table of Contents / Bioinformatics |
| Curated list of papers for Computational Genomics | 473 | almost 8 years ago | : |
| Awesome-Bioinformatics | 3,232 | over 2 years ago | : |
| Practical Computing for Biologists by Steven Haddock and Casey Dunn | | | |
| An Introduction to Bioinformatics Algorithms by Pavel Pevzner | | | |
| Bioinformatics and Functional Genomics by Jonathan Pevsner | | | |
| Bioinformatics Algorithms: An Active Learning Approach by Phillip Compeau and Pavel Pevzner | | | |
| Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids | | | |
| Bioinformatics: The Machine Learning Approach by Pierre Baldi | | | |
| Current topics in Genome Analysis 2016 by NIH-NHGRI | | | |
| Statistical Methods in Bioinformatics: An Introduction by Ewens | | | |
| Introduction to Protein-DNA Interactions by Gary Stormo | | | |
| Introduction to Genomics by Arthur M. Lesk | | | |
| Theory of Basic Alignment Search Tool (BLAST) | | | |
| Translational Bioinformatics by PLOS Collections | | | |
Table of Contents / Statistics |
| Introduction to Statistical Learning (with applications in R) by Hastie et al. | | | |
| Nature's Statistics for Biologists collection | | | |
| Statistical Done Wrong by Alex Reinhart | | | |
| Statistics Inference by George Casella | | | |
Table of Contents / Structural Biology | Proteins |
| Algorithms in Structural Molecular Biology by Bruce R. Donald | | | |
| Introduction to Protein Structure by Branden and Tooze | | | |
| Proteins: Structures and Molecular Properties by Creighton | | | |
Table of Contents / Data Analysis | Programming |
| The Cartoon Guide to Statistics by Gonick | | | |
| The Analysis of Biological Data by Whitlock and Schluter | | | |
| Practical Computing for Biologists by Haddock and Dunn | | | |
| Advanced Python for Biologists by Dr Martin O Jones | | | |
Table of Contents / Laboratory Protocol Manuals |
| Molecular Cloning: A Laboratory Manual by Sambrook | | | |
| Prescott's Microbiology | | | |
| Nature Protocols | | | |
Table of Contents / Blogs/Links |
| What are some essential websites for biologists? | | | |
| Talks at ICTS | | | , an
interesting collection of talks on statistical physics, systems biology, and
much more |
| Papers-per-week | 5 | over 10 years ago | , my collection of papers (with reviews!) |
| Protein Love @ Quora | | | |
| Bioscience club @ Quora | | | , discusses great biology related answers on Quora |
| it is NOT junk | | | , a blog about genomes, DNA, evolution, open science by |
| Virology, immunology, biology @ Quota | | | by Ian York |
| Quorky Biology | | | |
| Biophysics Research Blog | | | |
| reddit/biology | | | |
| reddit/bioinformatics | | | |
| reddit/learnbioinformatics | | | |
| Biostars Tutorials | | | |
| Rosalind | | | |
Table of Contents / Podcasts |
| This Week in Microbiology by Vincent Racaniello | | | |
| Nature Podcasts | | | |
| Evolution Talk Podcast | | | |
| The Naked Scientists' Podcasts | | | , with four biology related podcasts, The Naked Scientists, eLife, Naked Genetics, and Naked Neuroscience |
Table of Contents / Tools |
| ResearchKit | 5,618 | almost 2 years ago | , Framework to create apps for medical research |
| OMICS Tools | | | , A huge collection of tools |
| bioconda-recipes | 1,653 | almost 2 years ago | , Conda recipes to install bioinformatics software |
| PDBREMIX | 62 | over 8 years ago | , Library to analyze protein structures and protein simulations |
| scikit-bio | | | , in development Python library for bioinformatics |
| BioPython | | | , Python libraries that implement a rich set of modules to handle wide class of biological computations |
| SciFeeds | | | , Aggregates science mentioned in articles, social media, and news media to help identify important scientific advances |
| Linuxbrew | | | , port of Homebrew, a Mac OS package manager, for Linux |
Table of Contents / Journals |
| Top Publications (Life Sciences) - Google Scholar | | | |
| Annual Reviews | | | |
| Cell Press | | | |
| Current Opinion | | | |
| Nature | | | |
| Oxford Journals | | | |
| PNAS | | | |
| Science | | | |
Table of Contents / MOOCs |
| Bioinformatics: Journey to the Frontier of Computational Biology Specialization | | | |
| Complexity Explorer by Santa Fe Institute | | | |
| Epigenetic Control of Gene Expression | | | |
| Experimental Genome Science | | | |
| EMBL-EBI Online Training Courses | | | |
| Fundamentals of Biology - OCW.MIT | | | |
| HarvardX's PH525-x Data Analysis Series | | | |
| Introduction to Systems Biology | | | |
| Introduction to Biomedical Imaging | | | |
| Introduction to Human Evolution | | | |
| Network Analysis in Systems Biology | | | |
| Neuronal Dynamics: Computational Neuroscience of Single Neurons | | | |
| Principles of Synthetic Biology | | | |
| Principles of Biochemistry | | | |
| Proteins: Biology's Workforce | | | |
| videolectures.net - Biology | | | |
Table of Contents / Competitions |
| International Genetically Engineered Machines (iGEM) | | | |
| DREAM Challenges | | | |
| ISCB Wikipedia Competition | | | |
| Open Science Prize | | | |
| sbv IMPROVER Challenges | | | |
Table of Contents / Conferences |
| American Society of Human Genetics (ASHG) | | | |
| Biology of Genomes | | | |
| Gordon Research Conferences | | | |
| Intelligent Systems for Molecular Biology (ISMB) | | | |
| RECOMB | | | |
awesome-biology
jnv/listssigven/pcgr
crazyhottommy/rna-seq-analysis
mhh-rcug/nf_wochenende
guigolab/ipsa-nf
iarcbioinfo/gvcf_pipeline-nf
xonsh/xontrib-jupyter
datasciencemasters/data
ujjwalkarn/datasciencer
stencila/stencila
niderhoff/nlp-datasets
skanehira/docui
liquid-legal-institute/legal-ontologies