MBGBLHGP_2019
Data analysis script
Code repository for reproducing RNA-seq data analysis results from a specific scientific paper
Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"
23 stars
9 watching
3 forks
Language: Jupyter Notebook
last commit: about 4 years ago Related projects:
| Repository | Description | Stars |
|---|---|---|
| pachterlab/cwgflhgcchap_2021 | Analyzing multiplexed single-cell RNA-seq data from a marine organism, providing tools for preprocessing, clustering, and analysis of gene expression across different cell types. | 2 |
| pachterlab/kb_python | A Python package that provides a unified interface to multiple pre-processing workflows for single-cell RNA-seq data. | 157 |
| pachterlab/gget | Enables efficient querying of genomic databases using a modular approach and multiple tools | 955 |
| pachterlab/kallistobustools | A workflow for pre-processing single-cell RNA-seq data using Kallisto and Bustools. | 115 |
| pachterlab/sleuth_paper_analysis | A collection of R code to reproduce analyses from the sleuth paper | 16 |
| pachterlab/pcca | A software project that performs statistical analysis on biological data using Principal Component Correlation Analysis (PCCA) and related methods. | 18 |
| pachterlab/sircel | A tool for identifying and quantifying cell barcodes from single-cell genomics sequencing data. | 41 |
 guigolab/grape-nf | Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers | 37 |
 nghiavtr/bpsc | A package for analyzing single-cell RNA-seq data using a beta-Poisson model. | 16 |
 rglab/mast | Provides tools and methods for analyzing single-cell RNA sequencing data using statistical models | 228 |
 gao-lab/cell_blast | An open-source tool for querying and annotating large-scale single-cell RNA-seq data using similarity searches. | 87 |
| guigolab/ipsa-nf | An integrative pipeline for analyzing splicing events from RNA sequencing data | 9 |
 kharchenkolab/numbat | Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells | 171 |
 yjzhang/uncurl_python | Analyzes single-cell RNA-seq data using statistical models and machine learning algorithms | 15 |
 bcbio/bcbio-nextgen | A high-level configuration file drives parallel variant calling and analysis on sequencing data. | 995 |