SingleSplice
Splicing detector
An algorithm for detecting alternative splicing in single cells from RNA sequencing data.
Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: http://nar.oxfordjournals.org/content/early/2016/01/05/nar.gkv1525.full
21 stars
4 watching
5 forks
Language: C++
last commit: over 8 years ago
Linked from 2 awesome lists
seandavi/awesome-single-cell
hussainather/awesome-alternative-splicingRelated projects:
| Repository | Description | Stars |
|---|---|---|
 yeolab/outrigger | Automates detection and quantification of alternative splicing events from RNA seq data using graph databases. | 65 |
 comprna/suppa | An analysis tool for studying splicing at different levels across multiple conditions | 264 |
 yjzhang/uncurl_python | Analyzes single-cell RNA-seq data using statistical models and machine learning algorithms | 15 |
 jonathanshor/doubletdetection | A tool for detecting technical errors in single-cell RNA-seq data | 87 |
 chris-mcginnis-ucsf/doubletfinder | Detects doublets in single-cell RNA sequencing data by analyzing cell distances and proportions of artificial neighbors | 424 |
 guigolab/ipsa-nf | An integrative pipeline for analyzing splicing events from RNA sequencing data | 9 |
 calico/solo | An algorithm to identify and separate doublet cells from single cell RNA-seq data in a machine learning framework. | 86 |
 nlawlor/v-sva | An interactive R application to detect and annotate hidden sources of variation in single cell RNA-seq data | 7 |
 swolock/scrublet | A tool to identify technical doublets in single-cell RNA-seq data by removing co-encapsulated cells from the analysis | 138 |
 iosonofabio/singlet | Analyzes single cell RNA sequence data with quantitative phenotypes | 13 |
 cortes-ciriano-lab/scomatic | A tool for detecting somatic variants in single-cell data | 177 |
 pachterlab/kb_python | A Python package that provides a unified interface to multiple pre-processing workflows for single-cell RNA-seq data. | 157 |
 snakemake-workflows/single-cell-rna-seq | A workflow generator for single-cell RNA-seq data analysis | 100 |
| pachterlab/cwgflhgcchap_2021 | Analyzing multiplexed single-cell RNA-seq data from a marine organism, providing tools for preprocessing, clustering, and analysis of gene expression across different cell types. | 2 |
 single-cell-genetics/cardelino | An R package for identifying clonal structures from single-cell RNA sequencing data using Bayesian methods. | 59 |