SingleSplice

yeolab/outrigger65

Splice analyzer

Automates detection and quantification of alternative splicing events from RNA seq data using graph databases.

comprna/suppa264

Splicing analyzer

An analysis tool for studying splicing at different levels across multiple conditions

yjzhang/uncurl_python15

RNA Seq Analyzer

Analyzes single-cell RNA-seq data using statistical models and machine learning algorithms

jonathanshor/doubletdetection87

Doublet detector

A tool for detecting technical errors in single-cell RNA-seq data

chris-mcginnis-ucsf/doubletfinder424

Doublet detector

Detects doublets in single-cell RNA sequencing data by analyzing cell distances and proportions of artificial neighbors

guigolab/ipsa-nf9

Splicing analyzer

An integrative pipeline for analyzing splicing events from RNA sequencing data

calico/solo86

Doublet detector

An algorithm to identify and separate doublet cells from single cell RNA-seq data in a machine learning framework.

nlawlor/v-sva7

Variation detector

An interactive R application to detect and annotate hidden sources of variation in single cell RNA-seq data

swolock/scrublet138

Doublet detector

A tool to identify technical doublets in single-cell RNA-seq data by removing co-encapsulated cells from the analysis

iosonofabio/singlet13

Data analyzer

Analyzes single cell RNA sequence data with quantitative phenotypes

cortes-ciriano-lab/scomatic177

Mutation detector

A tool for detecting somatic variants in single-cell data

pachterlab/kb_python157

RNA seq processor

A Python package that provides a unified interface to multiple pre-processing workflows for single-cell RNA-seq data.

snakemake-workflows/single-cell-rna-seq100

RNA-seq analyzer

A workflow generator for single-cell RNA-seq data analysis

pachterlab/cwgflhgcchap_20212

Cell RNA-Seq Analysis

Analyzing multiplexed single-cell RNA-seq data from a marine organism, providing tools for preprocessing, clustering, and analysis of gene expression across different cell types.

single-cell-genetics/cardelino59

clonal analyzer

An R package for identifying clonal structures from single-cell RNA sequencing data using Bayesian methods.