awesome-alternative-splicing

alternative expression analysis by massively parallel sequencing

analyze alternative splicing from single-cell and RNA-Seq data

assemble and quantify transcripts

identify differential exon usage

flotilla

reproduce machine learning analysis of gene expression and alternative splicing data

detect complex variants and splicing in short reads, SNP-tolerant

maps splice junctions to genome

discovery canonical and non-canonical splice junctions in short read datasets

identify differential splice junctions

map RNA-seq data to reference genome for splice junction discovery

determine alternative splicing expression

statistically determine alternative splicing

outrigger

calculate alternative splicing scores of RNA-Seq data based on junction reads and a de novo, custom annotation created with a graph database, especially made for single-cell analyses

RNA-Seq Multavariate Analysis of Transcript Splicing

rmats2sashimiplot

visualize rMATS output using sashimi plots

identify splicing events from RNA-Seq data

reconstruct transcript isoforms

SingleSplice

detect biological variation in alternative splicing within a population of single cells

discover and align splice junctions for RNA-Seq reads

detect alternative splicing and predict coding potential

detect differential splicing using RNA-Seq data

predict splice events from RNA-Seq data

identify alternative splicing

SUPPA

identify alternative splicing

map splice junctions for RNA-Seq reads

Alternative Splicing in Plants

Alternative Splicing Gallery for human genes

Alternative Splicing PredICtion DataBase

Human and mouse genome annotations

Friendly Alternative Splicing and Transcripts Database

A website for querying a relational database of constitutive and alternative human exons, by using biological and descriptive features

Data set of Homo Sapiens Exon, Intron and Splice regions extracted from GenBank Rel.123

Human-transcriptome DataBase for Alternative Splicing

Convenient access, identification, and annotation of alternative splicing events (ASEs), designed specifically with experimentalists in mind

Alternative splicing database based on protein, mRNA, and EST Sequences

Visualizing splicing of genes from EST Data for human, mouse, Drodophila and Arabidopsis