CITE-seq-Count

CITE analyzer

A tool to analyze antibody tagging from CITE-seq experiments

A tool that allows to get UMI counts from a single cell protein assay

GitHub

79 stars
11 watching
44 forks
Language: Python
last commit: about 2 years ago
Linked from 1 awesome list

10xciteseqdropseqsingle-cell

Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
htseq/htseqA Python library to facilitate analysis of data from high-throughput sequencing experiments.95
hms-dbmi/scdeProvides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis.173
pachterlab/cwgflhgcchap_2021Analyzing multiplexed single-cell RNA-seq data from a marine organism, providing tools for preprocessing, clustering, and analysis of gene expression across different cell types.2
yeolab/outriggerAutomates detection and quantification of alternative splicing events from RNA seq data using graph databases.65
gao-lab/cell_blastAn open-source tool for querying and annotating large-scale single-cell RNA-seq data using similarity searches.87
hoohm/dropseqpipeA pre-processing workflow for SingleCell RNASeq data from raw sequencing data to final count matrix with QC plots.147
niaid/dsbDeconvolution method to remove noise from antibody-derived tag data64
crazyhottommy/rna-seq-analysisA collection of resources and tools for analyzing RNA sequencing data using Python and Snakemake workflows951
ocropus/hocr-toolsTools for manipulating and analyzing multi-lingual OCR results by representing them in a standard HTML format373
jhu99/scbeanAnalyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq16
scverse/scvi-toolsProbabilistic analysis tools for single-cell omics data1,270
yjzhang/uncurl_pythonAnalyzes single-cell RNA-seq data using statistical models and machine learning algorithms15
snakemake-workflows/single-cell-rna-seqA workflow generator for single-cell RNA-seq data analysis100
zix99/rareA tool that provides fast and efficient text analysis and visualization capabilities275
sidneycadot/oeisTools for analyzing and processing sequence data from the Online Encyclopedia of Integer Sequences.46