CITE-seq-Count

CITE analyzer

A tool to analyze antibody tagging from CITE-seq experiments

A tool that allows to get UMI counts from a single cell protein assay

GitHub

79 stars
11 watching
44 forks
Language: Python
last commit: 4 months ago
Linked from 1 awesome list

10xciteseqdropseqsingle-cell

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
htseq/htseq A Python library to facilitate analysis of data from high-throughput sequencing experiments. 94
hms-dbmi/scde Provides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis. 173
pachterlab/cwgflhgcchap_2021 Analyzing multiplexed single-cell RNA-seq data from a marine organism, providing tools for preprocessing, clustering, and analysis of gene expression across different cell types. 2
yeolab/outrigger Automates detection and quantification of alternative splicing events from RNA seq data using graph databases. 62
gao-lab/cell_blast An open-source tool for querying and annotating large-scale single-cell RNA-seq data using similarity searches. 86
hoohm/dropseqpipe A pre-processing workflow for SingleCell RNASeq data from raw sequencing data to final count matrix with QC plots. 147
niaid/dsb Deconvolution method to remove noise from antibody-derived tag data 63
crazyhottommy/rna-seq-analysis A collection of resources and tools for analyzing RNA sequencing data using Python and Snakemake workflows 936
ocropus/hocr-tools Tools for manipulating and analyzing multi-lingual OCR results by representing them in a standard HTML format 370
jhu99/scbean Analyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq 16
scverse/scvi-tools Probabilistic analysis tools for single-cell omics data 1,251
yjzhang/uncurl_python Analyzes single-cell RNA-seq data using statistical models and machine learning algorithms 15
snakemake-workflows/single-cell-rna-seq A workflow generator for single-cell RNA-seq data analysis 97
zix99/rare A tool that provides fast and efficient text analysis and visualization capabilities 275
sidneycadot/oeis Tools for analyzing and processing sequence data from the Online Encyclopedia of Integer Sequences. 46