OmicsPLS

Data integrator

A tool for integrating and analyzing high-dimensional biological data using partial least squares regression

R package for High dimensional data analysis and integration with O2PLS!

GitHub

31 stars
4 watching
8 forks
Language: R
last commit: over 2 years ago
Linked from 1 awesome list

bioinformaticsbiostatisticsdata-integrationlatent-variable-modelsmulti-omicsomicspartial-least-squares-regressionpcaplsprincipal-component-analysis

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
kchen-lab/bindsc A tool for integrating multi-omics data from single cell sequencing technologies to improve analysis accuracy and discovery of biological patterns. 34
peterzzq/scdart A deep learning framework designed to integrate multi-modal single cell data from different modalities while preserving cell trajectory structures. 10
jsxlei/scalex A tool for integrating single-cell data from heterogeneous sources into a common cell-space using deep learning techniques. 72
usc-isi-i2/web-karma An information integration tool for data modeling and transformation from various data sources into standardized RDF format. 588
jhu99/scbean Analyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq 16
cancerai-cl/integrativevaes Designs and builds neural networks to integrate diverse cancer patient data types for accurate diagnosis and clinical applications. 27
kieranrcampbell/embeddr Analyzes single-cell RNA-seq data using pseudotemporal ordering and clustering 12
nghiavtr/bpsc A package for analyzing single-cell RNA-seq data using a beta-Poisson model. 16
zudi-lin/pytorch_connectomics A deep learning framework for automatic and semi-automatic segmentation of 3D image stacks in connectomics 171
sonalgoyal/hiho A tool for integrating data from various sources into a centralized repository on Hadoop 91
vibscc/dali Tool for integrated analysis of single-cell RNAseq data and immune receptor profiling data 20
scverse/scvi-tools Probabilistic analysis tools for single-cell omics data 1,251
drisso/bioc2016singlecell Analyzing single-cell RNA-seq data using R and Bioconductor tools 77
apache/gobblin A distributed data integration framework for managing structured and byte-oriented data in heterogeneous ecosystems 2,229
esri/deep-learning-frameworks A package manager for installing and configuring deep learning frameworks for ArcGIS software. 451