BioQueue

Bioinformatics workflow optimizer

An open-source platform to optimize and streamline bioinformatics analysis workflows by estimating system resource requirements.

A novel pipeline framework to accelerate bioinformatics analysis

GitHub

29 stars
6 watching
10 forks
Language: Python
last commit: over 3 years ago
Linked from 1 awesome list

bioinformaticsbioinformatics-pipeline

Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
zhangxiaoyu11/omivaeThis project provides an end-to-end deep learning model for low dimensional latent space extraction and multi-class classification on multi-omics datasets.31
evoldoers/biomakeUtility for managing builds and complex workflows in bioinformatics103
lancelafontaine/bioinformatics-compbio-toolsA curated list of bioinformatics and computational biology tools for researchers.50
robsyme/workflows-proteogenomicsVersioned and shareable computational biology workflows for proteogenomics analysis.2
hmkim/workflowA Nextflow-based bioinformatics workflow framework providing tools and examples for automating computational workflows in life sciences research9
bionode/biohackerA workshop project providing examples and usage guidance for using bionode in bioinformatics pipelines5
nextflow-io/nf-hack17An initiative to develop and showcase Nextflow-based pipelines for bioinformatics analysis10
nf-core/toolsProvides a set of reusable Python functions and tools for bioinformatics and workflow management.245
liboyue/beerA collection of numerical experiments and code for demonstrating the performance of decentralized nonconvex optimization methods8
hadrieng/pipelinesA collection of reusable computational pipelines for bioinformatics tasks.2
brml/climinA Python package for gradient-based function optimization in machine learning181
ncbi-hackathons/spewAutomates the packaging and distribution of bioinformatics pipelines for seamless deployment on various workstations.26
pharmbio/sciluigiA lightweight wrapper around Spotify's Luigi workflow library to simplify writing scientific workflows335
datacanvasio/hypergbmAutomated machine learning tool for tabular data pipelines343
papenfusslab/bioshakeA tool for defining and compiling bioinformatics workflows in Haskell using a build system55