rna-quick
RNA analyzer
A framework for analyzing RNA sequencing data to identify differentially expressed genes and transcripts
Differential gene, transcript, exon, and splice junction testing framework. (pre-alpha)
4 stars
4 watching
0 forks
Language: R
last commit: over 4 years ago
Linked from 1 awesome list
nextflow-io/awesome-nextflowRelated projects:
| Repository | Description | Stars |
|---|---|---|
 nf-core/rnaseq | An RNA sequencing analysis pipeline that performs quality control, trimming, alignment, and quantification of gene expression from raw sequencing data. | 941 |
 joeburns06/hocuspocus | A tool for analyzing single-cell RNA-Seq data | 0 |
 lingfeiwang/normalisr | A software framework for analyzing single-cell RNA sequencing data | 18 |
 zji90/sepa | An R package providing tools for analyzing single-cell RNA-seq data and identifying gene expression patterns. | 4 |
| nf-core/lncpipe | Analyzes long non-coding RNA molecules from RNA-seq data | 34 |
 dtm2451/dittoseq | A suite of functions for analyzing and visualizing RNA sequencing data | 191 |
 phoenixding/scdiff | Analyzes single-cell RNA-seq data to predict cell differentiation trajectories and associated transcription factors and genes. | 28 |
 snakemake-workflows/single-cell-rna-seq | A workflow generator for single-cell RNA-seq data analysis | 100 |
 yjzhang/uncurl_python | Analyzes single-cell RNA-seq data using statistical models and machine learning algorithms | 15 |
 jingshuw/descend | A package for deconvolving gene expression distributions and performing differential analysis in single-cell RNA sequencing data | 16 |
| jdidion/biotools | A collection of bioinformatics tools and resources organized by topic and category | 590 |
 iosonofabio/singlet | Analyzes single cell RNA sequence data with quantitative phenotypes | 13 |
 wycwycpku/rscore | Tools and utilities for single-cell RNA-seq data analysis with network features | 25 |
 kdkorthauer/scdd | An R package to identify genes with differential distributions in single-cell RNA-seq experiments | 32 |
| jdidion/atropos | A tool for trimming high-quality NGS reads from sequencing data | 120 |