sars-cov-2

SARS data analyzer

A tool for analyzing SARS-CoV-2 genomic data using Nextflow and Apache Spark

SARS-CoV-2 (Severe acute respiratory syndrome coronavirus 2) sequences and features

GitHub

1 stars
3 watching
1 forks
Language: Nextflow
last commit: about 5 years ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
cdcgov/sc2cliaAnalyzes SARS-CoV-2 sequencing data using a bioinformatics pipeline4
bu-isciii/sars-cov2_analysisAn initiative to collect and analyze data on SARS-CoV2 for bioinformatics analysis using Python.11
connor-lab/ncov2019-artic-nfAutomates bioinformatics analysis of SARS-COV2 sequencing data using the ARTIC network's fieldbioinformatics tools.91
kharchenkolab/numbatAnalyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells171
evanfloden/vast-tools-nfA Nextflow implementation of VAST-TOOLS for profiling alternative splicing events in RNA-Seq data5
nasqar/seuratv3wizardAn R-based web application for guided single-cell RNA-seq data analysis and clustering33
hfisser/truck_detection_sentinel2_covid19Automated detection of trucks using Sentinel-2 satellite data during the COVID-19 pandemic.96
ismms-himc/clustergrammer2An interactive data visualization tool for single-cell RNA-seq data116
zeeev/whamSoftware tool for detecting and analyzing structural variants in genomes104
nf-core/sarekA workflow designed to detect germline and somatic variants from WGS and targeted sequencing data using bioinformatics tools.412
johntruckenbrodt/s1_ardAn analysis framework for testing the readiness of Sentinel-1 SAR backscatter data18
fredhutch/oncoscapeAn online platform providing tools and analysis for molecular and clinical data to aid in cancer research179
joeburns06/hocuspocusA tool for analyzing single-cell RNA-Seq data0
jtaghiyar/kronosA workflow assembler for genome analytics and informatics.19
bigdatagenomics/adamA platform for parallelizing genomic data analysis on large clusters1,005