ZFVascularQuantification
Vascular quantification
An image analysis pipeline to quantify vascular structures in zebrafish using light sheet fluorescence microscopy
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720
10 stars
2 watching
0 forks
Language: ImageJ Macro
last commit: over 1 year ago
Linked from 1 awesome list
fijifiji-macro-languageimage-processinglightsheetmicroscopymicroscopy-dataopensciencequantificationregistrationsegmentationvasculaturezebrafish
Related projects:
Repository | Description | Stars |
---|---|---|
villekf/omega | Reconstructs tomographic data from ray-tracing based imaging data | 69 |
fish-quant/big-fish | A toolbox for analyzing microscopy images of cells labeled with single-molecule fluorescent in situ hybridization (smFISH) tags. | 57 |
qifeidkn/stagate | A software framework for learning spatial embeddings from high-dimensional transcriptomics data using an adaptive graph attention auto-encoder | 37 |
emx77/asi_mtf | Calculates MTF based on knife edge measurement using ImageJ macro | 17 |
pachterlab/kallisto | A software framework for efficiently quantifying RNA-seq data from sequencing reads. | 656 |
zuberlab/crispr-process-nf | Tools for processing CRISPR and shRNA data in a high-throughput screening workflow | 3 |
jhsmit/colicoords | An open-source Python project for analyzing fluorescence microscopy data from rodlike cells. | 26 |
yuifu/millefy | Visualizes read coverage of single-cell RNA-seq datasets in genomic contexts to highlight cell-to-cell heterogeneity | 27 |
yufeifeiyu/matlab-deep-learning-toolbox-cnn-water-image-recognition | A MATLAB-based system for water body segmentation and binary image generation using Convolutional Neural Networks | 50 |
nf-core/rnafusion | A bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data | 143 |
liuquande/feddg-elcfs | A framework for federated learning on medical image segmentation using continuous frequency space interpolation. | 240 |
lilab-bcb/cirrocumulus | An interactive visualization tool for large-scale single-cell genomics data | 75 |
biocorecrg/vectorqc | Analyzes DNA sequencing data from circular vectors to generate annotated maps and GenBank files. | 5 |
zudi-lin/pytorch_connectomics | A deep learning framework for automatic and semi-automatic segmentation of 3D image stacks in connectomics | 171 |
cytomining/cytominer | Software for preprocessing and analyzing large cell profiling datasets | 49 |