SoupX
Data cleaner
A tool to quantify and remove cell-specific mRNA contamination from single-cell RNA-seq data.
R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
260 stars
6 watching
37 forks
Language: R
last commit: over 2 years ago
Linked from 1 awesome list
Related projects:
Repository | Description | Stars |
---|---|---|
| A command-line tool for improving text datasets used in machine learning by removing duplicates and filtering out unwanted data | 114 |
| Deconvolutes single-cell RNA-seq data from potential doublets to remove contamination | 69 |
| Recover gene expression profiles from noisy single-cell RNA-seq data using regression and empirical Bayes methods. | 109 |
| Probabilistic analysis tools for single-cell omics data | 1,270 |
| A C-based Elixir binding for a popular HTML cleaning tool. | 9 |
| Automated tool to detect and flag spatial and temporal errors in biological data | 79 |
| Tools for quality control and normalization of single-cell RNA-seq data | 53 |
| Library that provides dynamic data cleaning and filtering capabilities for PyTorch datasets and samplers | 378 |
| A workflow generator for single-cell RNA-seq data analysis | 100 |
| Analyzes and cleans up media libraries in Sitecore databases to optimize storage usage. | 2 |
| A software pipeline for analyzing single-cell RNA-seq data from droplet-based experiments | 88 |
| Tool for filtering and highlighting decompiler output based on regular expressions | 125 |
| A suite of functions for analyzing and visualizing RNA sequencing data | 191 |
| Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells | 171 |
| An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations | 7 |