epiScanpy
Epigenomics analyzer
A toolkit for analyzing single-cell epigenomics data from open chromatin and DNA methylation experiments.
Episcanpy: Epigenomics Single Cell Analysis in Python
141 stars
4 watching
32 forks
Language: Python
last commit: 8 days ago
Linked from 1 awesome list
Related projects:
Repository | Description | Stars |
---|---|---|
aertslab/cistopic | An R package for identifying cell states and cis-regulatory topics from single-cell epigenomics data | 135 |
lkremer/scbs | A command-line tool for analyzing single-cell DNA methylation data | 11 |
epurdom/cobolt | Analyzes and integrates multimodal single-cell sequencing data from different modalities | 18 |
euxhenh/cellar | An interactive software tool for analyzing single-cell omics data | 31 |
kharchenkolab/numbat | Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells | 166 |
eiriniar/cellcnn | A Python-based software framework for analyzing mass/flow cytometry data to identify phenotype-associated cell subsets. | 65 |
cortes-ciriano-lab/scomatic | A tool for detecting somatic variants in single-cell data | 170 |
scverse/scanpy | A Python toolkit for analyzing large-scale single-cell gene expression data | 1,919 |
mhh-rcug/nf_wochenende | A tool for analyzing metagenomic data by aligning short or long reads against a reference sequence and generating reports on bacterial growth and abundance | 13 |
asncd/mimosca | A tool for designing and analyzing pooled single cell RNA-seq perturbation experiments to understand biological dynamics | 86 |
compbel/scifil | A computational tool for analyzing single cell sequencing data to infer fitness landscapes of cancer cell populations. | 5 |
chrisquince/desman | Software for analyzing genetic data from environmental samples to infer the presence of specific strains | 69 |
epurdom/clusterexperiment | A package providing tools for comparing and analyzing clusterings of single-cell sequencing data | 37 |
pachterlab/cwgflhgcchap_2021 | Analyzing multiplexed single-cell RNA-seq data from a marine organism, providing tools for preprocessing, clustering, and analysis of gene expression across different cell types. | 2 |
andreaskapou/melissa | A software framework for analyzing single-cell DNA methylation data using Bayesian methods | 14 |