peax
Epigenome explorer
An interactive visual pattern search tool for exploring epigenomic data using unsupervised deep representation learning and autoencoders.
Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders
68 stars
5 watching
14 forks
Language: Jupyter Notebook
last commit: almost 2 years ago
Linked from 1 awesome list
autoencoderdata-visualizationdeep-learningepigenomicsinteractive-machine-learningpattern-searchsequential-data
keller-mark/awesome-biological-visualizationsRelated projects:
| Repository | Description | Stars |
|---|---|---|
 colomemaria/episcanpy | A toolkit for analyzing single-cell epigenomics data from open chromatin and DNA methylation experiments. | 141 |
 neuron-team/vscode-ipe | An extension that brings interactive programming experience to data scientists in Visual Studio Code | 354 |
 aertslab/cistopic | An R package for identifying cell states and cis-regulatory topics from single-cell epigenomics data | 135 |
 lilab-bcb/cirrocumulus | An interactive visualization tool for large-scale single-cell genomics data | 75 |
 renumics/spotlight | An interactive data exploration tool for unstructured datasets | 1,125 |
 bruot/pyrmexplorer | A graphical user interface explorer for Remarkable tablets. | 66 |
 mzwiessele/topslam | A tool for extracting probabilistic epigenetic landscapes from single cell gene expression measurements. | 12 |
 qifeidkn/stagate | A software framework for learning spatial embeddings from high-dimensional transcriptomics data using an adaptive graph attention auto-encoder | 37 |
 sc0vu/vuethexplore | An application that explores the Ethereum blockchain using Vue.js | 33 |
 edward130603/bayesspace | A Bayesian model for clustering and enhancing spatial gene expression data | 111 |
 soulis-1256/eagle.nvim | A plugin that displays diagnostic and lsp information in a customizable floating window triggered by mouse or keyboard interaction. | 249 |
 interactivereport/cellxgene_vip | A tool for generating high-resolution visualization plots and performing differential gene expression analysis from single cell RNA sequencing data | 134 |
 nghiavtr/bpsc | A package for analyzing single-cell RNA-seq data using a beta-Poisson model. | 16 |
 metagenomics/meragene | An open-source software pipeline that uses Hidden-Markov-Models to identify genes in metagenomics data and provide reliable results | 4 |
 marcelrobeer/explabox | An exploratory tool for analyzing and understanding machine learning models | 15 |