awesome-biological-visualizations

Browse COSMIC data by tissue type and histology

Explore functional genomic data sets for correlations between genomic and/or phenotypic variables

Visualization, analysis and download of large-scale cancer genomics data sets

Interactive exploration of mutation rates, mutation signatures, clinical data, gene mutations

Visualization and collaborative annotation of genomic aberrations

Interactive visualization of mutational signatures and clinical data

An interactive visualization of patient gender, race, and age in The Cancer Genome Atlas (TCGA) dataset

Omics analysis tool for clinical phenotype prediction

Mutational signatures extracted from cancer samples and isogenic cell-based experiments

An integrated suite of analysis tools for users to explore hypotheses related to molecular and clinical data

Interactively visualize genomic data

A genome browser for vertebrate genomes that supports research in comparative genomics, evolution, sequence variation and transcriptional regulation

Analyze your experimental results in the functional context of gene-gene networks from multiple organisms

A graph-based tool for reconstruction of plasmids from next generation sequence pair-end datasets

A phylogenetic tree viewer

Visualization, analysis, and editing of phylogenetic trees

Helps predict the function of genes and gene sets

Visualize variants of the human genome

A genome-wide almanac of co-essential modules assigns function to uncharacterized genes

A grammar-based toolkit for scalable and interactive genomics data visualization

A tool for exploring genomic contact matrices and tracks

A tool for visually exploring and aggregating reoccurring patterns (like loops, TADs, etc.) in Hi-C maps

An integrative analysis and visualization platform for 3D genome

Visualization for Hi-C data

3D genome browser and TADbit front-end

Interactive statistical and visual analysis of metagenomic data

Explore how genes are expressed across more than 500 individual Plasmodium parasites

Interactive visual analytics for functional genomics data

Epigenome and genome interaction

Displays many sequencing-based data sets across all or part of the genome, on specific gene sets or pathways, and in the context of their metadata

Browse relative mRNA expression data for cancer cell lines from the Cancer Cell Line Encyclopedia (CCLE) by tissue of origin using Clustergrammer

Peax

Interactive visual pattern exploration in epigenomic data using unsupervised deep representation learning

A platform for understanding cancer mutations in the context of 3D protein structure

Visualisation and image production of protein and nucleic acid structures

Visualization of large-scale macromolecular structure data

Visual integration tool for exploration of spatial single-cell experiment data

Visualize cell type signatures of alternative splicing in postnatal development

Spatial transcriptomics in Alzheimer's disease

Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format

Interactive visualization of large-scale spatial gene expression and tissue morphology data

A web-based visualization package for spatial transcriptomic data

An interactive explorer for single-cell transcriptomics data

An interactive viewer for single-cell expression

Large-scale visualization of drug-induced transcriptomic signatures

A collaborative portal to analyze single-cell transcriptomics data

A visualization tool for large-scale scRNA-seq datasets

Atlas of cell types from the Linnarsson Lab

Reducing barriers and accelerating single-cell research

Atlas of human and mouse transcriptomic cell types

Interactive visualization of single-cell data in virtual reality

A tool for uncovering high-dimensional structure in single-cell gene expression data

Shiny Transcriptome Analysis Resource Tool allows users to visualize RNA-seq data starting with count data

The Interactive SummarizedExperiment Explorer

Tumor Immune Single-cell Hub (TISCH) is a scRNA-seq database focusing on tumor microenvironment

Single cell gene expression across species

Versatile matrix visualization and analysis software

Visualize high-dimensional data as interactive hierarchically clustered heatmaps

Slide and image data

A lightweight "batteries-included" WebGL viewer for remote imaging data in Bio-Formats Zarr or OME-TIFF format

Tool for visualization of highly detailed maps of neuronal connectivity in the fly brain

A high-resolution map of neural connections in the mouse brain

A human-AI collaboration to map the fly connectome

A platform for metabolite annotation of imaging mass spectrometry data

Cytosplore is an interactive visual analysis system for the analysis of mass cytometry data

Real-time tracking of virus evolution

Visualizations of disease worldwide

Visualization of the lifespans of multiple species

Life expectancies around the world, 1960 to 2009

Scientific evidence for popular health supplements

Tool for visualizing the sieve analyses of HIV-1 vaccine efficacy trials