cellpose
Cell segmentation tool
A software framework for cell segmentation in microscopy images with human-in-the-loop capabilities and image restoration
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
1k stars
29 watching
407 forks
Language: Jupyter Notebook
last commit: 26 days ago
Linked from 1 awesome list
cell-biologycell-segmentationsegmentation
hallvaaw/awesome-biological-image-analysisRelated projects:
| Repository | Description | Stars |
|---|---|---|
 computational-cell-analytics/micro-sam | Tools for interactive microscopy image segmentation and tracking | 372 |
 cellprofiler/cellprofiler-analyst | A tool for exploring and analyzing large biological image sets to identify complex phenotypes | 148 |
 dcjones/proseg | An open-source software package for probabilistic cell segmentation in spatial transcriptomics | 46 |
 vanvalenlab/cellsam | A Python library providing inference code for a foundation model of cell segmentation using PyTorch. | 58 |
 zjufanlab/sccatch | Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes | 219 |
 cytomining/cytominer | Software for preprocessing and analyzing large cell profiling datasets | 49 |
| zjufanlab/scdeepsort | A tool for accurately annotating cell types in single-cell RNA sequencing data using deep learning | 99 |
 brainglobe/cellfinder | Automated 3D cell detection tool for large images in microscopy and neuroscience research | 181 |
 oist/usiigaci | Automated cell tracking in phase contrast microscopy images using machine learning and computer vision techniques | 193 |
 schmollerlab/cell_acdc | A Python framework for analyzing and annotating microscopy data | 138 |
 kreshuklab/plant-seg | A tool for cell instance aware segmentation in densely packed 3D volumetric images | 101 |
 rahi-lab/yeaz-gui | An interactive tool for segmenting yeast cells using deep learning-based image analysis | 27 |
 jhsmit/colicoords | A platform for analyzing fluorescence microscopy data from rodlike cells. | 26 |
 sentinal4d/cellshape | Analyzes 3D cell shape features using deep learning for cancer research | 21 |
 mahmoodlab/maps | A machine learning framework for annotating cell types from spatial proteomics data | 49 |