OpenMicroscopy

Microscopy hub

A collection of resources and projects facilitating collaboration and sharing in the field of microscopy

Non-comprehensive list of projects and resources related to open microscopy.

GitHub

131 stars
15 watching
28 forks
last commit: 4 months ago
Linked from 1 awesome list


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Related projects:

Repository Description Stars
ome/openmicroscopy Develops software and data format standards for the storage and manipulation of biological microscopy data. 202
tobetz/legomicroscope An open-source project providing instructions and resources for building a simple microscope using Lego parts. 999
henriqueslab/zerocostdl4mic A toolkit for using deep learning in microscopy without requiring extensive coding expertise 566
zeiss-microscopy/oad Automates microscopy workflows using Python and AI tools to simplify and customize image acquisition, analysis, and processing. 127
pycroscopy/atomai A PyTorch-based package for analyzing microscopy data with machine learning algorithms 197
schmollerlab/cell_acdc A Python framework for analyzing and annotating microscopy data 134
openlists/otherlists A curated collection of resources and lists on various topics, including science, coding, neuroscience, and industry. 5
python-microscopy/python-microscopy An application suite for light microscopy acquisition, data storage, visualization, and analysis. 84
mozillascience/openguides A repository providing guides and advice on best practices for working openly in scientific research 4
meichthys/foss_photo_libraries A comparison repository of photo libraries with features and capabilities. 1,979
open-science-tools/nd2reader A software package for reading microscopy images and metadata from NIS Elements files 45
labsyspharm/mcmicro An end-to-end microscopy processing pipeline that extracts features from multiplexed whole slide imaging and tissue microarrays using containerized steps. 113
allencellmodeling/aicsimageio Provides Python tools for reading, writing and managing microscopy images 206
opencontainers/.github Centralized hub for Open Containers Initiative information and project governance 46
vrrenske/bactmap A package for analyzing and visualizing microscopy data, integrating segmentation tools with Rstats and ggplot2. 4