dipy

MRI analysis library

A comprehensive library for analyzing and processing medical imaging data from diffusion MRI

DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

GitHub

716 stars
57 watching
440 forks
Language: Python
last commit: 13 days ago
Linked from 1 awesome list

bundlescontextual-enhancementdenoisingdiffusion-mridkidtimachine-learningmedical-imagingmicrostructureneuroanatomyneuroimagingpatch2selfpythonregistrationsegmentationself-supervised-learningspherical-harmonicstrackingtractographytractometry

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
nipy/nibabel A package that provides access to various neuro-imaging file formats through a unified interface. 654
cbib/dypfish A Python library for statistical analysis of mRNA and protein distributions in single cell confocal images 2
dltk/dltk A toolkit for building and prototyping deep learning models for medical image analysis 1,429
dib-lab/2012-paper-diginorm Provides source code and analysis pipeline for evaluating an image normalization technique using publicly available data 8
dipum/dipum-toolbox A collection of MATLAB functions for image processing and analysis 105
rraadd88/htsimaging A Python package for analyzing high-throughput single-cell imaging data 5
image-py/imagepy An image processing framework for Python that integrates with various libraries and allows for plugin-based extension. 1,304
perone/medicaltorch A framework for building deep learning models on medical imaging data 851
pycroscopy/atomai A PyTorch-based package for analyzing microscopy data with machine learning algorithms 194
omarsar/mri-analysis-pytorch Analyzes medical images using PyTorch and a specialized library to segment structures such as spinal cord gray matter. 63
scverse/squidpy A Python library for analyzing and visualizing spatial molecular data from single-cell genomics and tissue images 440
flika-org/flika An interactive image processing tool for analyzing biological microscopy images 22
jaredthecoder/biopy A collection of biologically-inspired algorithms written in Python 45
deepmed-lab-ecnu/deeprft-aaai2023 A deep learning-based image deblurring system that explores the impact of frequency selection on restoration quality 18
nitrain/nitrain A framework-agnostic Python library for training AI models on medical images 1,865