awesome-neuroscience

Nengo

Library for creating and simulating large-scale brain models

Nitime

Timeseries analysis for neuroscience data

Nilearn

Module for performing statistical learning/machine learning on NeuroImaging data

DIPY

Toolbox for analysis of MR diffusion imaging

MNE-Python

Community-driven software for processing time-resolved neural signals including electroencephalography (EEG) and magnetoencephalography (MEG)

NiBabel

Provides read and write access to some common medical and neuroimaging file formats

PsychoPy

Package for running psychology and neuroscience experiments. It allows for creating psychology stimuli in Python

NuPic

Numenta Platform for Intelligent Computing is an implementation of Hierarchical Temporal Memory (HTM), a theory of intelligence based strictly on the neuroscience of the neocortex

Brian2

Free, open source simulator for spiking neural networks

expyriment

Platform-independent lightweight Python library for designing and conducting timing-critical behavioural and neuroimaging experiments

BindsNET

Package for simulating spiking neural networks for reinforcement & machine learning

SpikeInterface

Framework designed to unify spike-sorting technologies

NiMARE is a Python package for neuroimaging meta-analyses

Open software for simulating dynamical systems in neuroscience

Open-source application dedicated to the analysis of brain recordings (MEG, EEG, fNIRS, ECoG, depth electrodes and multiunit electrophysiology)

Interactive Matlab toolbox for processing continuous and event-related EEG, MEG and other electrophysiological data

FieldTrip

Toolbox for MEG and EEG analysis

Free set of Matlab and GNU Octave functions for vision and neuroscience research

Free and open source software for the analysis of brain imaging data sequences (fMRI, PET, SPECT, EEG, MEG)

Brayns

Minimalistic visualiser that can perform ray-traced rendering of neurons. Ray-tracing can help to highlight areas of neural circuits where cells touch each other and where synapses are being created leading to a better understanding of how individual cells and subsequently the brain functions

Brainbrowser

Library exposing set of web-based 3D visualization tools primarily targetting neuroimaging

Library for creating and running behavioural experiments in a web browser

nat: NeuroAnatomy Toolbox

Package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons

brainGraph

Package for performing graph theory analyses of brain MRI data

Open-access electronic textbook and interactive courseware covering neuroscience in depth. Provided by the Department of Neurobiology and Anantomy at the University of Texas Medical School at Houston

Text which provides an in-depth introduction to the main ideas in the computational cognitive neuroscience, a field which aims to understand the brain by using biologically based computational models

Open-access electronic textbook that covers computational and theoretical neuroscience. Provided by École Polytechnique Fédérale de Lausanne (EPFL)

Book companion to . Provides an introduction to working in a Unix environment, fMRI analysis, and commonplace neuroimaging tools and topics

Textbook for the , covers fundamental concepts in neuroimaging analysis and how they relate to the wider world of statistics, engineering and computer science. Learn how to work with data and code to get a deeper understanding of how fMRI methods work, how they can fail, how to fix them, and how to develop new methods

's neuroscience blog which offers a look at the latest developments in neuroscience, psychiatry and psychology through a critical lens

Often critical takes on the most sensationalistic recent findings in Human Brain Imaging, Cognitive Neuroscience, and Psychopharmacology

Maintained by , this blog typically covers one research paper in a single entry

Forum operated by neuroscience editors at the journal, Nature

A large collection of articles, tutorials, and videos, covering many of the popular neuroimaging tools and methods

Serves an introductory survery of topics in neuroscience and has no specific prerequisites, though some prior exposure to biology and/or chemistry can be helpful

Introduction to the mammalian nervous system, with emphasis on the structure and function of the human brain

Provides an introduction to basic computational methods for understanding what nervous systems do and for determining how they function

Explores the functional organization and neurophysiology of the human central nervous system, while providing a neurobiological framework for understanding human behavior

Neuromatch Academy

Jupyter notebooks for the three-week intensive summer school in computational neuroscience

Neuroscience topic on Quora contains answers, often by experts, to questions ranging from basic to advanced

List of neuroscience, psychology and cognitive science subreddits

Psychology and neuroscience StackExchange site

A list for discussion of neuroimaging analysis in Python. Among other things, this list is home to discussions concerning projects (including NiBabel, Nilearn, dipy, MNE-Python, and more)

Harvard Mahoney Neuroscience Institute's quarterly e-newsletter

A mailing list that is is intended to address the broad range of research approaches and issues involved in the general field of computational neuroscience

A mailing list that delivers weekly easy-to-read summaries of the latest neuroscience publications

Awesome Public Datasets - Neuroscience

High-quality open neuroscience datasets

Simulator for a historical computational model based on neurons

Searchable database for computational neuroscience models

Searchable database for of three types of neuronal properties: voltage gated conductances, neurotransmitter receptors, and neurotransmitter substances

Searchable database of neurons and their electrophysiological properties (extracted from literature)

Interactive mindmap containing curated resources for anyone interested in learning neuroscience

neuroSummerSchools

List of summer (and seasonal) summer schools in neuroscience and related fields

Neuroscience podcast where real neuroscientists sit down and talk about the brain

Summer school in neuroimaging and data science, held at the University of Washington eScience Institute. Lectures are available through the institute's

SORTED

SORTED: a list of interesting science ideas and links (cognitive/neuro & data science)