CaImAn

Calcium imaging analysis

A Python toolbox for large-scale Calcium Imaging Analysis

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

GitHub

644 stars
47 watching
371 forks
Language: Python
last commit: almost 2 years ago
Linked from 2 awesome lists

2-photoncalcium-imagingcnmfdeconvolutionmotion-correctionsource-extraction

Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
flatironinstitute/caiman-matlabA tool for analyzing large-scale calcium imaging data using advanced signal processing and machine learning techniques.252
flatironinstitute/normcorreAn online algorithm for correcting motion in calcium imaging data146
bahanonu/ciatahSoftware package for analyzing one- and two-photon calcium imaging datasets84
cbib/dypfishA Python library for statistical analysis of mRNA and protein distributions in single cell confocal images2
bigballon/cifar-zooProvides implementations of CNN architectures and improvement methods for image classification on the CIFAR benchmark.703
jinghaolu/min1pipeAutomated pipeline for processing calcium imaging data from MINiscope cameras59
fish-quant/big-fishA toolbox for analyzing microscopy images of cells labeled with single-molecule fluorescent in situ hybridization (smFISH) tags.58
mouseland/suite2pA software framework for processing two-photon calcium imaging data from neuroscience research.361
rraadd88/htsimagingA Python package for analyzing high-throughput single-cell imaging data5
aka-discover/ccmba_cvpr23Improving semantic segmentation robustness to motion blur using custom data augmentation techniques6
cern/tigreA toolbox providing high-performance algorithms for tomographic reconstruction on GPUs594
ethanhe42/u-netA convolutional neural network architecture for biomedical image segmentation430
ngxbac/kaggle-rsnaA Python-based deep learning project for medical image analysis, specifically focused on detecting RSNA intracranial hemorrhage.41
chrisquince/desmanSoftware for analyzing genetic data from environmental samples to infer the presence of specific strains69
caiostringari/deepwavesDevelops deep neural networks to classify active wave breaking events17