suite2p

Neuroimaging processor

A software framework for processing two-photon calcium imaging data from neuroscience research.

cell detection in calcium imaging recordings

GitHub

361 stars
19 watching
243 forks
Language: Jupyter Notebook
last commit: over 2 years ago
Linked from 1 awesome list

data-analysisimagingneuroscience

Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
jinghaolu/min1pipeAutomated pipeline for processing calcium imaging data from MINiscope cameras59
flatironinstitute/caimanA Python toolbox for large-scale Calcium Imaging Analysis644
gardner-lab/finchscopeA modular system for single-photon fluorescent imaging of neural activity in various animals.35
progamergov/neural-dreamAn implementation of DeepDream algorithm using PyTorch for image processing and computer vision.133
mahmoudnafifi/cie_xyz_netA software framework for unprocessing images to enhance low-level computer vision tasks using color processing and deep neural networks.79
bunpc/homer3Software for analyzing and visualizing near-infrared spectroscopy brain imaging data93
canlab/canlabcoreA collection of core tools and functionalities for neuroimaging analysis in MATLAB.149
nikolaypavlov/mlpneuralnetA fast neural network library for iOS and Mac OS X with vectorized operations and hardware acceleration.900
flatironinstitute/caiman-matlabA tool for analyzing large-scale calcium imaging data using advanced signal processing and machine learning techniques.252
poldrack/narpsA repository providing code and tools for analyzing neuroimaging data to improve replication and prediction in neuroscientific research.34
jczic/micromlpA lightweight implementation of a multilayer perceptron neural network for use in embedded systems and microcontrollers183
nilearn/nilearnA comprehensive toolkit for analyzing brain imaging data using machine learning and statistical techniques.1,214
natverse/natAn R package for visualizing and analyzing 3D biological image data64
shigekikarita/grain2A library that provides an autograd and GPGPU framework for dynamic neural networks in D.7
bluebrain/morphioA C++ library for reading and writing neuronal morphology data in various file formats.27