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open-computational-neuroscience-resources

by asoplata

awesome listpushed over 2 years ago

A publicly-editable collection of open computational neuroscience resources

AI summary

Brain analysis toolkit

A collection of resources and tools for analyzing and simulating brain data and neural systems

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What's in the list

165 links in 27 sections, with live GitHub stats.activeno commit in 2y

Meta-resources

Markup Languages for Model Specification

Markup Languages for Model Specification / NeuroML - A model description language for computational neuroscience

Markup Languages for Model Specification

Open Code

Open Code / Elephant - Software for common electrophysiological data analysis operations

  • Neurotools

    Elephant is the direct successor to

  • Neo

    Elephant can consume electrophysiology data loaded by

Open Code

Open Code / (deprecated) OpenElectrophy - Analysis software for electrophysiological data, built on Neo

Open Code

Open Code / GENESIS / PGENESIS - Longstanding platform for neural simulation

Open Code

Open Code / HNN - Human Neocortical Neurosolver - Simulation of MEG/EEG source waveforms using NEURON

Open Code

Open Code / PyRhO - Virtual laboratory for optogenetic simulation. Integrates with NEURON and Brian2 models.

Open Code

Open Courses and Educational Resources

Open Courses and Educational Resources / Course: Neuronal Dynamics at edX

Open Courses and Educational Resources

Open Data

Open Data / Allen Brain Atlas Data Portal

Open Data

Open Data / Neurodata Without Borders: Neurophysiology (NWB:N) data standard for neurophysiology, including intracellular, extracellular, optical physiology, tracking, and stimulus data

Open Data

Organizations and Communities

Reproducibility and Provenance

Reproducibility and Provenance / Alpaca - Provenance for data analysis in Python

  • Neo

    Provides examples for use with and

Reproducibility and Provenance

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