benchfam
Alignment Benchmark
Generates a benchmark dataset for evaluating protein alignment programs
3 stars
15 watching
1 forks
Language: Shell
last commit: almost 7 years ago
Linked from 1 awesome list
nextflowpipeline
Related projects:
| Repository | Description | Stars |
|---|---|---|
| cbcrg/mta-nf | Automates multiple sequence alignment by evaluating and selecting the best guide tree variations | 2 |
| cbcrg/ampa-nf | An automated pipeline for predicting protein antimicrobial regions | 5 |
| cbcrg/grape-nf | A pipeline for RNA-Seq analyses using nextflow | 2 |
 mazhar-ansari-ardeh/benchmarkfcns | Provides benchmarking functions for mathematical optimization algorithms | 66 |
| cbcrg/piper-nf | A pipeline tool for detecting and mapping long non-coding RNAs from RNA sequences. | 18 |
 aifeg/benchlmm | An open-source benchmarking framework for evaluating cross-style visual capability of large multimodal models | 83 |
| cbcrg/kallisto-nf | A tool suite implementing Kallisto and Sleuth RNA-seq analysis pipelines in Nextflow | 22 |
 x-plug/cvalues | Evaluates and aligns the values of Chinese large language models with safety and responsibility standards | 477 |
 biocorecrg/bionextflow | A collection of reusable modules and sub-workflows for Nextflow pipelines in bioinformatics | 26 |
 crickbabs/babs-adnaseq | A Nextflow pipeline script for processing ancient DNA sequencing data. | 2 |
 songlab-cal/tape | Provides pre-trained protein embeddings and benchmarking tools for semi-supervised learning tasks in protein biology | 662 |
 qbic-pipelines/icgc-featurecounts | Automated pipeline for featureCounts on RNAseq BAM files from ICGC datasets | 3 |
 nextflow-io/crg-course-nov16 | A tutorial project on using Nextflow and Docker for implementing a RNA-Seq pipeline | 23 |
 iarcbioinfo/bametrics-nf | Tools for computing average metrics from reads overlapping given positions | 1 |
 bodigrim/tasty-bench | A lightweight benchmarking framework with a simple statistical model | 80 |