yeast-GEM
Metabolic simulator
A genome-scale metabolic model of Saccharomyces cerevisiae for simulating cellular metabolism and predicting growth
The consensus GEM for Saccharomyces cerevisiae
96 stars
18 watching
46 forks
Language: MATLAB
last commit: 7 days ago
Linked from 1 awesome list
biologyconsensusgenome-scale-modelshacktoberfestmatlabmetabolic-modelspythonreconstructionsaccharomyces-cerevisiaestandard-gemsystems-biologyyeast
uhub/awesome-matlabRelated projects:
| Repository | Description | Stars |
|---|---|---|
| sysbiochalmers/gecko | A toolbox for incorporating enzyme constraints into genome-scale models of biological systems | 67 |
 biosteamdevelopmentgroup/biosteam | Tool for simulating and analyzing biorefinery processes under uncertainty | 179 |
 gem5/gem5 | A modular simulator for evaluating computer system architectures and designs | 1,692 |
 yoseflab/symsim | A software tool for simulating variability in single cell RNA sequencing data by incorporating multiple factors | 24 |
 choderalab/openmmtools | A toolkit providing tools and methods for simulating molecular systems using the OpenMM engine | 251 |
 radis/radis | A software framework for calculating high-resolution infrared molecular spectra | 214 |
 gcyuan/scuba | A MATLAB package for modeling cell differentiation and lineage relationships from single-cell gene expression data. | 11 |
 dos-group/vessim | A co-simulation framework for modeling complex energy systems and their interactions with computing systems. | 49 |
 geem-lab/overreact | An in-silico lab for automating quantum chemical microkinetic simulations of complex chemical reactions | 51 |
 psumodeling/cycles | A daily time-step agroecosystem model simulating biophysical processes and management practices in cropping systems | 12 |
 ecsim/gopem | A graphical user interface for simulating PEM fuel cell systems | 33 |
 ss3sim/ss3sim | Tools and methods for simulating fish populations in support of fisheries management | 39 |
 georgeoshardo/symbac | Generates high-quality synthetic images of bacterial cells to aid machine learning-based image segmentation algorithms. | 19 |
 project-dc/pygeneses | A PyTorch-based framework for training and studying artificial species in bio-inspired environments | 72 |
 ficusss/pygmnormalize | A package for normalizing gene expression matrices using various techniques. | 9 |