supercells
Spatial segmentation library
A package for spatial data analysis by partitioning the data into superpixels based on their similarity
The goal of supercells is to utilize the concept of superpixels to a variety of spatial data.
66 stars
6 watching
5 forks
Language: R
last commit: 3 months ago
Linked from 1 awesome list
rr-packagerspatialrstatsspatial
sacridini/awesome-geospatialRelated projects:
| Repository | Description | Stars |
|---|---|---|
 spatialsimulator/xitosbml | Tool for converting segmented images to spatial SBML models for systems biology simulation | 7 |
 tanaylab/metacell | An R package that facilitates analysis of single-cell RNA-seq data by identifying homogeneous groups of cells. | 108 |
 16eagle/getspatialdata | An R package for querying, preprocessing and downloading various spatial datasets from public APIs. | 303 |
 r-spatial/sf | Provides simple features access for R, allowing users to work with geospatial data in a unified way across various formats and systems. | 1,345 |
 swainasish/spatialprompt | A software tool for analyzing spatial transcriptomics data by separating cell types from location information | 12 |
 jeremygelb/geocmeans | An R package implementing a spatial fuzzy clustering algorithm for analyzing data with a fuzzy dimension and accounting for spatial relationships. | 27 |
 rspatial/terra | An R package for spatial data analysis and processing of raster data. | 543 |
 asmagen/robustsinglecell | An R-based software package for analyzing scRNA-seq data to identify robust cell subpopulations and compare population compositions across different tissues and experimental models. | 13 |
| r-spatial/stars | Provides classes and methods for manipulating spatiotemporal data cubes with spatial raster dimensions and time bands. | 563 |
 harryprince/geospark | Enables spatial analysis in Apache Spark using SF functions | 57 |
 mapbox/supercluster | A JavaScript library for efficiently grouping and analyzing spatial data points into clusters | 2,111 |
 martaint/intercellar | An interactive R/Shiny app for analyzing cell-cell communication from single-cell transcriptomics data | 9 |
 rajewsky-lab/novosparc | Software tool to predict spatial locations of single cells in tissue using single-cell RNA sequencing data | 126 |
 spatstat/spatstat | A collection of packages and tools for analyzing spatial point pattern data | 197 |
 juliageometry/regiontrees.jl | A Julia package that provides a lightweight framework for defining and working with N-dimensional spatial data structures | 111 |