ChromA
Chromatin annotator
A tool for annotating chromatin accessibility based on ATACseq profile data
Chromatin Accessibility Annotation Tool
8 stars
4 watching
3 forks
Language: C++
last commit: over 1 year ago
Linked from 1 awesome list
Related projects:
Repository | Description | Stars |
---|---|---|
| An R-based web application for visualizing massive single-cell chromatin accessibility data using ArchR | 18 |
| A statistical framework for analyzing single-cell ATAC-seq data to reconstruct cis-regulatory elements' activities | 9 |
| A Clojure wrapper for the Tesseract OCR software, allowing developers to easily integrate optical character recognition capabilities into their applications. | 54 |
| An R package for identifying cell states and cis-regulatory topics from single-cell epigenomics data | 135 |
| An ATAC-Seq analysis pipeline written in shell script, providing tools for quality control, peak detection, and differential analysis of chromatin accessibility data. | 74 |
| An application that enables users to manually annotate images by applying an algorithmic segmentation process | 1,410 |
| Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes | 219 |
| A tool for annotating images and videos with rectangles and points. | 3 |
| A tool for adding annotations to ggplot2 plots interactively | 310 |
| Software for preprocessing and analyzing large cell profiling datasets | 49 |
| An interactive analysis toolbox for multiplexed image cytometry data | 1 |
| A tool for fast image data annotation and extraction with support for various data formats and augmentation techniques. | 954 |
| An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces | 39 |
| A personal repository showcasing Charles' expertise and interests in bioinformatics, programming languages, databases, and software tools. | 44 |
| An image annotation tool allowing users to edit and adjust images using customizable rectangle and contour tools. | 12 |