awesome-healthcare
by kakoni
Curated list of awesome open source healthcare software, libraries, tools and resources.
AI summary
Healthcare toolkit
A curated list of healthcare software and tools for developers to discover and use.
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What's in the list
160 links in 24 sections, with live GitHub stats.activeno commit in 2y
Contents / EHR
- Akello
Integrated Mental Health Infrastructure
- Bahmni
Electronic Medical Record and hospital system
- Cottage Med
Electronic Medical Record software designed by physicians
- GNU Health
Electronic Medical Record, Hospital Management, and Health Information System
- GNUmed
Electronic Medical Record software
- EHRBase
OpenEHR Clinical Data Repository
EHRServer
CaboLabs EHRServer
ERPNext
Modules that help manage patients, appointments, consultations, lab tests, and billing
- FreeMedForms EMR
Electronic Medical Record software
- HospitalRun
Helps provide the most modern Hospital Information System possible to the least resourced environments
- HOSxP
Thai Hospital Information System that aims to ease the healthcare workflow of health centers and central hospitals
- LibreHealth EHR
Clinically-focused Electronic Health Record System
- MedinTux
French Medical Practice Management System
Medplum
Developer platform that enables flexible and rapid development of healthcare apps
Odoo Medical
Universal Health and Hospital Information System
OpenClinic
Medical Records System
- OpenEMR
Electronic Health Records and Medical Practice Management application
- OpenEyes
Electronic Medical Record application for ophthalmology
- Open Hospital
Electronic Medical Record software for underprivileged rural hospitals
openMAXIMS
Full Patient Administration System designed for the NHS
- OpenMRS
Enterprise Electronic Medical Record System platform
- OSCAR EMR
OSCAR McMaster Project
- Ozone HIS
The entreprise-grade integrated health information system built with OpenMRS 3
- Ripple
NHS-funded, community led initiative working towards an integrated Digital Care Record Platform
Contents / Specifications
- Continuity of Care Document
Continuity of Care Document specifications
- DICOM Standards Browser
Provides an effective way to learn the DICOM standard and inspect DICOM attributes
- FHIR
Fast Health Interoperability Resources
- HL7 Version 2
Specifications for all versions of HL7v2
- OHDSI OMOP Common Data Model
Standardized data model for many healthcare concepts, awesome Github presence including scripts for many major relational databases
- OpenEHR
Open specification upon which software can be built
- Open mHealth
Open Standard For Mobile Health Data
- SMART on FHIR
Open standards based technology platform
Contents / Prescribing
OpenEP
Suite of medicines management apps that improve the safety and efficiency of prescribing and medicines management
Contents / Nursing
- open-eObs
Observation and clinical assessment platform that offers a real-time view of all patients across a ward
Contents / Imaging
- 3D Slicer
Cross-platform application for analyzing, visualizing and understanding medical image data
Cornerstone
Open source project with a goal to deliver a complete web based medical imaging platform
- dcm4che
Clinical Image and Object Management
Dicoogle
Dicoogle is an extensible, platform-independent and open-source PACS
Drishti
Tomography and electron-microscopy data visualizer for both scientists and lay people
DICOMcloud
A standalone DICOMweb server with RESTful implementation of the DICOMweb/WADO services
DICOM Server
OSS Implementation of DICOMweb standard
- DICOM Web Viewer
JavaScript/HTML5-based DICOM viewer with standard tools and a focus on supporting various screen sizes
- Fiji
Open-source platform for biological-image analysis
- Horos
Medical image viewer
- InVesalius
Open source software for reconstruction of computed tomography and magnetic ressonance images
- ITK
Toolkit used for the development of image segmentation and image registration programs with leading-edge algorithms in 2 and 3 dimensions
- ITK-SNAP
Interactive software for 3 dimensional image navigation, annotation, and automatic segmentation with an emphasis on user-friendliness
- LibreHealth Radiology
Customized version of LibreHealth Toolkit with additional tools for radiology and imaging professionals
Kaapana
Open source toolkit for state of the art platform provisioning in the field of medical data analysis
- Kheops
Open source platform for sharing medical images
OHIF
OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker
Omero
open source client/server system written in Java for visualizing, managing, and annotating microscope images and metadata
- OpenREM
Radiation Exposure Monitoring for physicists
OpenSlide
is a C library for reading whole slide image files
- Orthanc
Lightweight DICOM server for healthcare and medical research
Papaya
Pure JavaScript medical research image viewer
Slim
Interoperable web viewer and annotation tool for computational pathology
Viv
multiscale visualization of high-resolution multiplexed bioimaging data on the web
- VTK
3 dimensional visualization toolkit supporting a variety of algorithms and modeling techniques
Contents / Dental
- Open Dental
Dental Practice Management Software
- OpenMolar
Dental Practice Management Software
Contents / Laboratory
Contents / Frameworks
API Server
FHIR Server to support patient- and clinician-facing apps
Blaze
A FHIR Store with internal, fast CQL Evaluation Engine
CareKit
Open source software framework for creating apps that help people better understand and manage their health
- Clinical Meteor project
Meteor for FDA, HIPAA, and HL7 compliant applications
Clinical Quality Language
Clinical Quality Language is a HL7 standard for the expression of clinical knowledge
CyclOps
Framework for healthcare ML implementation
- FHIRBase
Storage based on the FHIR Standard
FHIR Proxy
secure application that acts as an intermediary in the transfer of FHIR data to and from Azure API
FHIR Works on AWS
FHIR Works on AWS deployment
FHIR Server for Azure
A .NET Core implementation of the FHIR standard
- Inferno
providing testing tools for the FHIR
Intervention Engine FHIR Server
Generic FHIR server implementation in GoLang
LinuxForHealth FHIR Server
Modular Java implementation of version 4 of the HL7 FHIR specification
Medblocks UI
Web Components for rapid development of openEHR and FHIR systems
- Opal
Framework for building clinical applications
ResearchKit
Software framework that makes it easy to create apps for medical research or for other research projects
Spark
Public domain FHIR server developed in C#
Sushi
a reference implementation command-line interpreter/compiler for FHIR
Swift-SMART
Swift SMART on FHIR framework for iOS and OS X
Contents / Libraries
Android FHIR SDK
The Android FHIR SDK
Archie
OpenEHR Library written in Java
Asymmetrik FHIR API Server
A secure REST implementation for the HL7 FHIR Specification
Datamol
Molecular Manipulation Made Easy. A light Python wrapper build on top of RDKit
- DCMTK
DICOM Toolkit
dicom
High Performance DICOM Medical Image Parser in GoLang
ehrapy
Electronic Health Record analysis in Python
Evil-DICOM
C# DICOM Library
Fellow Oak DICOM
DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono, and Unity
FHIRKit Client
Node FHIR client library
FHIRModels
FHIRModels is a Swift library for FHIR resource data models
FHIR .NET API
The official .NET API for HL7 FHIR
fhir.js
JavaScript client for FHIR
FHIR protocol buffers
A Google implementation of protocol buffers for FHIR
Graphir
GraphQL interface over FHIR API
HAPI FHIR
Java API for HL7 FHIR Clients and Servers
Hearth
A fast FHIR-compliant server focused on longitudinal data stores
Health data standards
Ruby library for generating and consuming various healthcare related formats. These include HITSP C32, QRDA Category I, and QRDA Category III
Hermes
a SNOMED CT terminology server
Metriport
Open-source universal API for healthcare data
- MITK
The Medical Imaging Interaction Toolkit
nhs-numbers
Python package to provide utilities for NHS Numbers, including validity checks, normalisation, and generation
Node HL7
Node module that is bridged with the Java Hapi HL7 library
Node-hl7-parser
Open source version of Redox's HL7 v2 to schema-fied JSON parser
php-fhir
Tools for creating PHP classes from the HL7 FHIR Specification
pynetdicom
A Python implementation of the DICOM networking protocol
Python HL7
Simple library for parsing messages of HL7 version 2.x into Python objects
Python SMART on FHIR client
Flexible Python client for FHIR servers supporting the SMART on FHIR protocol
Python 835 Parser
A simple-to-use Python interface to EDI 835 Health Care Claim Payment and Remittance Advice files
Ruby FHIR
FHIR client implementation in Ruby
Ruby HL7
Ruby HL7 library
Rust FHIR
Rust SDK for HL7 FHIR
TorchXRayVision
A library for chest X-ray datasets and models. Including pre-trained models
Contents / Applications
Intervention Engine
Provides a web-application for data-driven team huddles
SMART Pediatric Growth Chart
Pediatric growth charts
- Simple
For clinicians to track patients with high blood pressure
Contents / PHR
Fasten Health
open-source, self-hosted, personal/family electronic medical record aggregator
- Tidepool
Data platform to reduce the burden of Type 1 Diabetes
HealthLocker
Elixir-based personal health record
Contents / Telemedicine
- Healthcare worker at home
Open Source Telehealth software
Contents / Research
- i2b2
Research data warehouse
- LabKey Server
Platform for Translational Research
Contents / Integration
FHIR Converter
an open source project that enables conversion of health data from legacy formats to FHIR
Google HCLS Data Harmonization
an engine that converts data of one structure to another
NextGen Connect Integration Engine
The swiss army knife of healthcare integration
Open eHealth Integration Platform
An extension of the Apache Camel routing and mediation engine
- OpenHIM
Health information mediator
- Zato
A Python-based ESB and integration platform for healthcare interoperability, automation and orchestration
Contents / Hardware
Contents / Bioinformatics
Contents / Books
Inspired EHRs
Ideas, designs, and techniques for designing an Electronic Health Record (EHR)
Contents / Data
Atlas BI Library
The unified report library
- Caisis
Oncology research software with a Patient Data Management System
Cedar
Open source tool for testing the strength of Electronic Clinical Quality Measure
- cTAKES
Natural Language Processing System for extraction of information from Electronic Medical Record clinical free-text
EDS_NLP
provides a set of spaCy components to extract information from clinical notes written in French
eds-scikit
a tool to assist data scientists working on the AP-HP's Clinical Data Warehouse. It is specifically targeted for OMOP-standardized data
- IHRIS
Health Information System for management of human resources for health
- OpenSAFELY
Secure analytics platform for Electronic Health Records in the NHS
Snow Owl
Highly scalable, open source terminology server with revision-control capabilities and collaborative authoring platform features
Synthea Patient Generator
Synthetic patient generator that models the medical history of synthetic patients
Contents / Datasets
Medical Data for Machine Learning
Curated list of medical data for machine learning
Contents / Design
Determinants of Health
Determinants of Health Visualization
Health Icons
A collection of open source icons for public health projects
Contents / EMPI
MEDIC Client Registry RI
The Mohawk College MARC-HI/MEDIC Client Registry EMPI Implementation
Contents / Machine learning
- Healthcare.ai
Python and R tools for healthcare machine learning
MedicalGPT
Training Your Own Medical GPT Model with ChatGPT Training Pipeline
MONAI
AI Toolkit for Healthcare Imaging
PyHealth
A Deep Learning Python Toolkit for Healthcare Application
Contents / Asset Management
Tapirx
Networked medical device discovery and identification
Contents / Logistics
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