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awesome-healthcare

by kakoni

awesome listpushed about 2 years ago

Curated list of awesome open source healthcare software, libraries, tools and resources.

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Healthcare toolkit

A curated list of healthcare software and tools for developers to discover and use.

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What's in the list

160 links in 24 sections, with live GitHub stats.activeno commit in 2y

Contents / EHR

  • Akello

    Integrated Mental Health Infrastructure

  • Bahmni

    Electronic Medical Record and hospital system

  • Cottage Med

    Electronic Medical Record software designed by physicians

  • GNU Health

    Electronic Medical Record, Hospital Management, and Health Information System

  • GNUmed

    Electronic Medical Record software

  • EHRBase

    OpenEHR Clinical Data Repository

  • EHRServer

    CaboLabs EHRServer

  • ERPNext

    Modules that help manage patients, appointments, consultations, lab tests, and billing

  • FreeMedForms EMR

    Electronic Medical Record software

  • HospitalRun

    Helps provide the most modern Hospital Information System possible to the least resourced environments

  • HOSxP

    Thai Hospital Information System that aims to ease the healthcare workflow of health centers and central hospitals

  • LibreHealth EHR

    Clinically-focused Electronic Health Record System

  • MedinTux

    French Medical Practice Management System

  • Medplum

    Developer platform that enables flexible and rapid development of healthcare apps

  • Odoo Medical

    Universal Health and Hospital Information System

  • OpenClinic

    Medical Records System

  • OpenEMR

    Electronic Health Records and Medical Practice Management application

  • OpenEyes

    Electronic Medical Record application for ophthalmology

  • Open Hospital

    Electronic Medical Record software for underprivileged rural hospitals

  • openMAXIMS

    Full Patient Administration System designed for the NHS

  • OpenMRS

    Enterprise Electronic Medical Record System platform

  • OSCAR EMR

    OSCAR McMaster Project

  • Ozone HIS

    The entreprise-grade integrated health information system built with OpenMRS 3

  • Ripple

    NHS-funded, community led initiative working towards an integrated Digital Care Record Platform

Contents / Specifications

Contents / Prescribing

  • OpenEP

    Suite of medicines management apps that improve the safety and efficiency of prescribing and medicines management

Contents / Nursing

  • open-eObs

    Observation and clinical assessment platform that offers a real-time view of all patients across a ward

Contents / Imaging

  • 3D Slicer

    Cross-platform application for analyzing, visualizing and understanding medical image data

  • Cornerstone

    Open source project with a goal to deliver a complete web based medical imaging platform

  • dcm4che

    Clinical Image and Object Management

  • Dicoogle

    Dicoogle is an extensible, platform-independent and open-source PACS

  • Drishti

    Tomography and electron-microscopy data visualizer for both scientists and lay people

  • DICOMcloud

    A standalone DICOMweb server with RESTful implementation of the DICOMweb/WADO services

  • DICOM Server

    OSS Implementation of DICOMweb standard

  • DICOM Web Viewer

    JavaScript/HTML5-based DICOM viewer with standard tools and a focus on supporting various screen sizes

  • Fiji

    Open-source platform for biological-image analysis

  • Horos

    Medical image viewer

  • InVesalius

    Open source software for reconstruction of computed tomography and magnetic ressonance images

  • ITK

    Toolkit used for the development of image segmentation and image registration programs with leading-edge algorithms in 2 and 3 dimensions

  • ITK-SNAP

    Interactive software for 3 dimensional image navigation, annotation, and automatic segmentation with an emphasis on user-friendliness

  • LibreHealth Radiology

    Customized version of LibreHealth Toolkit with additional tools for radiology and imaging professionals

  • Kaapana

    Open source toolkit for state of the art platform provisioning in the field of medical data analysis

  • Kheops

    Open source platform for sharing medical images

  • OHIF

    OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker

  • Omero

    open source client/server system written in Java for visualizing, managing, and annotating microscope images and metadata

  • OpenREM

    Radiation Exposure Monitoring for physicists

  • OpenSlide

    is a C library for reading whole slide image files

  • Orthanc

    Lightweight DICOM server for healthcare and medical research

  • Papaya

    Pure JavaScript medical research image viewer

  • Slim

    Interoperable web viewer and annotation tool for computational pathology

  • Viv

    multiscale visualization of high-resolution multiplexed bioimaging data on the web

  • VTK

    3 dimensional visualization toolkit supporting a variety of algorithms and modeling techniques

Contents / Dental

Contents / Laboratory

  • OpenELIS

    Laboratory Information System for Global Health

  • SENAITE

    Laboratory Information Management System

Contents / Frameworks

  • API Server

    FHIR Server to support patient- and clinician-facing apps

  • Blaze

    A FHIR Store with internal, fast CQL Evaluation Engine

  • CareKit

    Open source software framework for creating apps that help people better understand and manage their health

  • Clinical Meteor project

    Meteor for FDA, HIPAA, and HL7 compliant applications

  • Clinical Quality Language

    Clinical Quality Language is a HL7 standard for the expression of clinical knowledge

  • CyclOps

    Framework for healthcare ML implementation

  • FHIRBase

    Storage based on the FHIR Standard

  • FHIR Proxy

    secure application that acts as an intermediary in the transfer of FHIR data to and from Azure API

  • FHIR Works on AWS

    FHIR Works on AWS deployment

  • FHIR Server for Azure

    A .NET Core implementation of the FHIR standard

  • Inferno

    providing testing tools for the FHIR

  • Intervention Engine FHIR Server

    Generic FHIR server implementation in GoLang

  • LinuxForHealth FHIR Server

    Modular Java implementation of version 4 of the HL7 FHIR specification

  • Medblocks UI

    Web Components for rapid development of openEHR and FHIR systems

  • Opal

    Framework for building clinical applications

  • ResearchKit

    Software framework that makes it easy to create apps for medical research or for other research projects

  • Spark

    Public domain FHIR server developed in C#

  • Sushi

    a reference implementation command-line interpreter/compiler for FHIR

  • Swift-SMART

    Swift SMART on FHIR framework for iOS and OS X

Contents / Libraries

  • Android FHIR SDK

    The Android FHIR SDK

  • Archie

    OpenEHR Library written in Java

  • Asymmetrik FHIR API Server

    A secure REST implementation for the HL7 FHIR Specification

  • Datamol

    Molecular Manipulation Made Easy. A light Python wrapper build on top of RDKit

  • DCMTK

    DICOM Toolkit

  • dicom

    High Performance DICOM Medical Image Parser in GoLang

  • ehrapy

    Electronic Health Record analysis in Python

  • Evil-DICOM

    C# DICOM Library

  • Fellow Oak DICOM

    DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono, and Unity

  • FHIRKit Client

    Node FHIR client library

  • FHIRModels

    FHIRModels is a Swift library for FHIR resource data models

  • FHIR .NET API

    The official .NET API for HL7 FHIR

  • fhir.js

    JavaScript client for FHIR

  • FHIR protocol buffers

    A Google implementation of protocol buffers for FHIR

  • Graphir

    GraphQL interface over FHIR API

  • HAPI FHIR

    Java API for HL7 FHIR Clients and Servers

  • Hearth

    A fast FHIR-compliant server focused on longitudinal data stores

  • Health data standards

    Ruby library for generating and consuming various healthcare related formats. These include HITSP C32, QRDA Category I, and QRDA Category III

  • Hermes

    a SNOMED CT terminology server

  • Metriport

    Open-source universal API for healthcare data

  • MITK

    The Medical Imaging Interaction Toolkit

  • nhs-numbers

    Python package to provide utilities for NHS Numbers, including validity checks, normalisation, and generation

  • Node HL7

    Node module that is bridged with the Java Hapi HL7 library

  • Node-hl7-parser

    Open source version of Redox's HL7 v2 to schema-fied JSON parser

  • php-fhir

    Tools for creating PHP classes from the HL7 FHIR Specification

  • pynetdicom

    A Python implementation of the DICOM networking protocol

  • Python HL7

    Simple library for parsing messages of HL7 version 2.x into Python objects

  • Python SMART on FHIR client

    Flexible Python client for FHIR servers supporting the SMART on FHIR protocol

  • Python 835 Parser

    A simple-to-use Python interface to EDI 835 Health Care Claim Payment and Remittance Advice files

  • Ruby FHIR

    FHIR client implementation in Ruby

  • Ruby HL7

    Ruby HL7 library

  • Rust FHIR

    Rust SDK for HL7 FHIR

  • TorchXRayVision

    A library for chest X-ray datasets and models. Including pre-trained models

Contents / Applications

Contents / PHR

  • Fasten Health

    open-source, self-hosted, personal/family electronic medical record aggregator

  • Tidepool

    Data platform to reduce the burden of Type 1 Diabetes

  • HealthLocker

    Elixir-based personal health record

Contents / Telemedicine

Contents / Research

Contents / Integration

Contents / Hardware

  • Gluco

    Glucometer

  • Murgen

    Ultrasound imaging development kit

  • OpenAPS

    The Open Artificial Pancreas System project is an open and transparent effort to make safe and effective basic Artificial Pancreas System

Contents / Bioinformatics

  • ADAM

    Genomics analysis platform

  • Bcbio

    Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

  • Galaxy

    Open web-based platform for data intensive biomedical research

  • Wregex

    Amino acid motif searching software with optional Position-Specific Scoring Matrix

Contents / Books

  • Inspired EHRs

    Ideas, designs, and techniques for designing an Electronic Health Record (EHR)

Contents / Data

  • Atlas BI Library

    The unified report library

  • Caisis

    Oncology research software with a Patient Data Management System

  • Cedar

    Open source tool for testing the strength of Electronic Clinical Quality Measure

  • cTAKES

    Natural Language Processing System for extraction of information from Electronic Medical Record clinical free-text

  • EDS_NLP

    provides a set of spaCy components to extract information from clinical notes written in French

  • eds-scikit

    a tool to assist data scientists working on the AP-HP's Clinical Data Warehouse. It is specifically targeted for OMOP-standardized data

  • IHRIS

    Health Information System for management of human resources for health

  • OpenSAFELY

    Secure analytics platform for Electronic Health Records in the NHS

  • Snow Owl

    Highly scalable, open source terminology server with revision-control capabilities and collaborative authoring platform features

  • Synthea Patient Generator

    Synthetic patient generator that models the medical history of synthetic patients

Contents / Datasets

Contents / Design

Contents / EMPI

Contents / Machine learning

  • Healthcare.ai

    Python and R tools for healthcare machine learning

  • MedicalGPT

    Training Your Own Medical GPT Model with ChatGPT Training Pipeline

  • MONAI

    AI Toolkit for Healthcare Imaging

  • PyHealth

    A Deep Learning Python Toolkit for Healthcare Application

Contents / Asset Management

  • Tapirx

    Networked medical device discovery and identification

Contents / Logistics

  • ID3C

    Data logistics system enabling real-time genomic epidemiology

  • OpenBoxes

    an Open Source Inventory and Supply Chain Management System

  • OpenLMIS

    Open source, web-based, electronic logistics management information system (LMIS) software, purpose-built to manage health commodity supply chains

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