geneformer
Gene predictor
A foundation transformer model for predicting gene expressions in single cell transcriptomes
37 stars
0 watching
3 forks
Language: Jupyter Notebook
last commit: 12 months ago Related projects:
| Repository | Description | Stars |
|---|---|---|
 inoue0426/drgat | This implementation uses Graph Attention Networks to predict drug response based on genetic influences in heterogeneous networks. | 3 |
 jensengroup/propka | A tool that predicts pKa values of ionizable groups in proteins and protein-ligand complexes based on their 3D structure. | 264 |
 jamesjcai/scgeatoolbox | A toolset for analyzing single-cell gene expression data from RNA sequencing experiments. | 24 |
 buenrostrolab/figr | A computational framework that integrates single-cell chromatin accessibility and gene expression data to infer transcriptional regulators of target genes. | 36 |
 zji90/sepa | A tool for analyzing single-cell RNA-seq data to identify gene expression patterns and perform GO enrichment analysis. | 4 |
 weiqiangzhou/bird | A software tool that predicts DNase I hypersensitivity based on gene expression data | 30 |
 yiqunchen/genept | A foundation model for single-cell biology tasks by leveraging large language model embeddings of gene descriptions. | 176 |
 edsgard/trendsceek | Identifies genes with spatial expression trends in single-cell gene-expression data | 49 |
 nghiavtr/bpsc | A package for analyzing single-cell RNA-seq data using a beta-Poisson model. | 16 |
 zjufanlab/sccatch | Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes | 218 |
 bowang-lab/scgpt | A Jupyter Notebook-based framework for training and applying generative AI models to single-cell multi-omics data | 1,039 |
 biomap-research/scfoundation | Develops large-scale models for single-cell transcriptomics data analysis | 261 |
 tgjeon/tensorflow-tutorials-for-time-series | A comprehensive guide to time series prediction using TensorFlow | 1,110 |
 microprediction/timemachines | Provides a simple and unified interface to various univariate time-series prediction algorithms | 405 |
 pinellolab/dictys | Reconstructs dynamic gene regulatory networks from single-cell RNA and ATAC-seq data to understand cell-type specific transcription factor regulation. | 111 |