geneformer
Gene predictor
A foundation transformer model for predicting gene expressions in single cell transcriptomes
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Language: Jupyter Notebook
last commit: about 1 year ago Related projects:
Repository | Description | Stars |
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| This implementation uses Graph Attention Networks to predict drug response based on genetic influences in heterogeneous networks. | 3 |
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| A toolset for analyzing single-cell gene expression data from RNA sequencing experiments. | 24 |
| A computational framework that integrates single-cell chromatin accessibility and gene expression data to infer transcriptional regulators of target genes. | 39 |
| An R package providing tools for analyzing single-cell RNA-seq data and identifying gene expression patterns. | 4 |
| A software tool that predicts DNase I hypersensitivity based on gene expression data | 30 |
| A foundation model for single-cell biology tasks by leveraging large language model embeddings of gene descriptions. | 211 |
| Identifies genes with spatial expression trends in single-cell gene-expression data | 50 |
| A package for analyzing single-cell RNA-seq data using a beta-Poisson model. | 16 |
| Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes | 219 |
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| Develops a large-scale model to analyze single-cell transcriptomics data and provides tools for downstream tasks such as gene expression enhancement and drug response prediction. | 276 |
| A comprehensive guide to time series prediction using TensorFlow | 1,108 |
| Provides a simple and unified interface to various univariate time-series prediction algorithms | 413 |
| Reconstructs dynamic gene regulatory networks from single-cell RNA and ATAC-seq data to understand cell-type specific transcription factor regulation. | 111 |