bam_realignment-nf
BAM realigner
An automated BAM realignment pipeline using samtools, bwa and sambamba.
bam realignment with samtools, bwa and sambamba
1 stars
4 watching
1 forks
last commit: over 10 years agoLinked from 1 awesome list
nextflow-io/awesome-nextflowRelated projects:
| Repository | Description | Stars |
|---|---|---|
| iarcbioinfo/gvcf_pipeline-nf | Generates GVCF from BAM files using GenomeAnalysisTK with realignment and recalibration steps | 4 |
| iarcbioinfo/bametrics-nf | Tools for computing average metrics from reads overlapping given positions | 1 |
 bryanwb/chef-rewind | Modifies existing resource definitions in place without requiring new resources to be created | 185 |
 matbme/jabs.nvim | A minimal Neovim buffer switcher with an interactive window display. | 283 |
 nalexn/blob_files | A utility for managing blob files across multiple platforms | 0 |
 smjonas/inc-rename.nvim | Provides an incremental LSP renaming feature with real-time visual feedback. | 692 |
| iarcbioinfo/gatk4-haplotypecaller-nf | Automates the process of haplotype calling from genotyped BAM files using GATK4 | 8 |
 jdonnerstag/vlang-mmap | Provides memory mapping functionality for a V-lang compiler | 5 |
 zeioth/garbage-day.nvim | Automates the stopping and starting of language-server clients to reclaim RAM when not in use. | 320 |
 planetis-m/bingo | A binary serialization framework for Nim | 20 |
 samtools/htslib | Provides access to common file formats used in high-throughput sequencing data | 815 |
 cartonalexandre/imba-realworld-example-app | A real-world application built with Imba showcasing CRUD operations and other features | 16 |
 nsacyber/bam | A tool that gathers and analyzes information about Windows updates, binaries, and symbols to aid in their analysis. | 156 |
| iarcbioinfo/mutect-nf | A Nextflow-based pipeline for somatic variant calling using mutect | 9 |
 nyoom-engineering/nyoom.nvim | A Neovim framework and configuration manager for building customized editing environments | 1,414 |