SLAT
Spatial alignment tool
A software package for aligning single-cell spatial omics data using deep learning and graph neural networks
Spatial-Linked Alignment Tool
80 stars
2 watching
7 forks
Language: Python
last commit: 6 months ago bioinformaticsdeep-learninggraph-neural-networkssingle-cellsingle-cell-analysisspatial-dataspatial-transcriptomics
Related projects:
Repository | Description | Stars |
---|---|---|
gao-lab/glue | A software framework for integrating multi-omics data from single cells | 382 |
raphael-group/paste | A method for aligning and integrating spatial transcriptomics data by leveraging both gene expression similarity and spatial distances | 78 |
raphael-group/paste2 | A software framework for aligning and reconstructing spatial transcriptomics data from non-overlapping samples | 29 |
su-informatics-lab/dstg | Software implementation of graph-based AI method for decomposing spatial transcriptomics data | 34 |
broadinstitute/tangram | A Python package for aligning single-cell transcriptomic data with spatial gene expression data. | 258 |
sciencebasedtargets/sbti-finance-tool | A toolkit to help companies assess and develop climate targets aligned with science-based guidelines | 51 |
zhoux85/staligner | Tool for aligning and integrating spatially resolved transcriptomics data using machine learning algorithms | 29 |
qifeidkn/stagate | A software framework for learning spatial embeddings from high-dimensional transcriptomics data using an adaptive graph attention auto-encoder | 37 |
bowang-lab/scgpt | A Jupyter Notebook-based framework for training and applying generative AI models to single-cell multi-omics data | 1,039 |
brainglobe/brainreg | Automated 3D brain registration software for aligning template brains to sample images. | 123 |
teichlab/spatialde | Tools and methods to analyze gene expression data in relation to spatial coordinates | 145 |
yulab-smu/ggsc | A package for visualizing single cell and spatial transcriptomics data using R | 43 |
paleolimbot/ggspatial | A framework for interacting with spatial data using ggplot2 as a plotting backend | 371 |
zjufanlab/spatalk | An R package that infers cell-cell communication and ligand-receptor-target networks from spatially resolved transcriptomic data | 62 |
dpeerlab/palantir | An algorithm for aligning cells along differentiation trajectories from single cell data | 221 |