CaImAn-MATLAB
Calcium imaging analyzer
A tool for analyzing large-scale calcium imaging data using advanced signal processing and machine learning techniques.
Complete Matlab pipeline for large scale calcium imaging data analysis
252 stars
58 watching
147 forks
Language: MATLAB
last commit: over 1 year ago
Linked from 1 awesome list
calcium-imagingmatlabroi-segmentationsource-extractionspikespike-deconvolutionspike-inference
uhub/awesome-matlabRelated projects:
| Repository | Description | Stars |
|---|---|---|
| flatironinstitute/caiman | A Python toolbox for large-scale Calcium Imaging Analysis | 644 |
| flatironinstitute/normcorre | An online algorithm for correcting motion in calcium imaging data | 146 |
 bahanonu/ciatah | Software package for analyzing one- and two-photon calcium imaging datasets | 84 |
 jinghaolu/min1pipe | Automated pipeline for processing calcium imaging data from MINiscope cameras | 59 |
 cardiac-mr-group-lund/segment-open | A software package for medical image analysis that provides tools and algorithms for segmentation, processing, and analysis of cardiovascular MRI images. | 72 |
 canlab/canlabcore | A collection of core tools and functionalities for neuroimaging analysis in MATLAB. | 149 |
 gibboncode/gibbon | A toolkit providing image filtering, segmentation, geometry modeling, and finite element analysis capabilities for MATLAB. | 193 |
 thomaskuestner/cs_moco_lab | Provides tools and frameworks for generating and reconstructing compressed sensing accelerated MRI sequences with motion correction capabilities. | 112 |
 fish-quant/big-fish | A toolbox for analyzing microscopy images of cells labeled with single-molecule fluorescent in situ hybridization (smFISH) tags. | 58 |
 priyavrat-misra/xrays-and-gradcam | This project uses deep learning to analyze chest radiographs and diagnose COVID-19. | 50 |
 bachlab/pspm | A software suite for model-based analysis of psychophysiological signals | 45 |
 mickcrosse/mtrf-toolbox | A MATLAB package for modeling and analyzing multivariate neural responses to dynamic stimuli. | 85 |
 biomedical-imaging-group/globalbioim | A Matlab framework for solving inverse problems in computational imaging | 80 |
 matlab-deep-learning/convmixer-patches-are-all-you-need | Demonstrates how to implement and train a ConvMixer architecture for image classification in MATLAB | 6 |
 adalca/neurite | A toolbox for building neural networks that analyze medical images | 340 |