CaImAn-MATLAB
Calcium imaging analyzer
A tool for analyzing large-scale calcium imaging data using advanced signal processing and machine learning techniques.
Complete Matlab pipeline for large scale calcium imaging data analysis
252 stars
58 watching
147 forks
Language: MATLAB
last commit: over 1 year ago
Linked from 1 awesome list
calcium-imagingmatlabroi-segmentationsource-extractionspikespike-deconvolutionspike-inference
Related projects:
Repository | Description | Stars |
---|---|---|
flatironinstitute/caiman | A Python toolbox for large-scale Calcium Imaging Analysis | 640 |
flatironinstitute/normcorre | An online algorithm for correcting motion in calcium imaging data | 145 |
bahanonu/ciatah | Software package for analyzing one- and two-photon calcium imaging datasets | 83 |
jinghaolu/min1pipe | Automated pipeline for processing calcium imaging data from MINiscope cameras | 59 |
cardiac-mr-group-lund/segment-open | A software package for medical image analysis that provides tools and algorithms for segmentation, processing, and analysis of cardiovascular MRI images. | 72 |
canlab/canlabcore | A collection of core tools and functionalities for neuroimaging analysis in MATLAB. | 149 |
gibboncode/gibbon | A toolkit providing image filtering, segmentation, geometry modeling, and finite element analysis capabilities for MATLAB. | 194 |
thomaskuestner/cs_moco_lab | Provides tools and frameworks for generating and reconstructing compressed sensing accelerated MRI sequences with motion correction capabilities. | 112 |
fish-quant/big-fish | A toolbox for analyzing microscopy images of cells labeled with single-molecule fluorescent in situ hybridization (smFISH) tags. | 57 |
priyavrat-misra/xrays-and-gradcam | This project uses deep learning to analyze chest radiographs and diagnose COVID-19. | 49 |
bachlab/pspm | A software suite for model-based analysis of psychophysiological signals | 45 |
mickcrosse/mtrf-toolbox | A MATLAB package for modeling and analyzing multivariate neural responses to dynamic stimuli. | 84 |
biomedical-imaging-group/globalbioim | A Matlab framework for solving inverse problems in computational imaging | 80 |
matlab-deep-learning/convmixer-patches-are-all-you-need | Demonstrates how to implement and train a ConvMixer architecture for image classification in MATLAB | 6 |
adalca/neurite | A comprehensive toolbox for building and training neural networks on medical image analysis tasks | 340 |