PyGMNormalize
Gene expression normalizer
A package for normalizing gene expression matrices using various techniques.
Python package for normalization of gene expression matrices.
9 stars
3 watching
3 forks
Language: Jupyter Notebook
last commit: almost 5 years ago
Linked from 1 awesome list
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
 abhishekvahadane/coderelease_colornormalization | Software package for stain separation and color normalization in histopathological images using computational pathology techniques | 66 |
 scverse/scanpy | A Python toolkit for analyzing large-scale single-cell gene expression data | 1,919 |
 lanagarmire/ssrge | A Python package that performs sparse linear model fitting on gene expression data and SNV matrices. | 33 |
 rhondabacher/scnorm | Package providing a robust method for normalizing single-cell RNA-seq data | 47 |
 johnnykv/mnemosyne | Normalizes honeypot data from various feeds for analysis | 45 |
 dib-lab/2012-paper-diginorm | Provides source code and analysis pipeline for evaluating an image normalization technique using publicly available data | 8 |
 information-fusion-lab-umass/nux | A library for building parametric models of complex distributions using normalizing flows and JAX. | 82 |
 nghiavtr/bpsc | A package for analyzing single-cell RNA-seq data using a beta-Poisson model. | 16 |
 gwgundersen/dpcca | Develops a method to learn shared latent structure between biomedical images and gene expression data | 25 |
 syntax-tree/nlcst-normalize | A utility to normalize words for comparison by standardizing punctuation and case. | 7 |
 zqfang/gseapy | A software package for performing gene set enrichment analysis in various types of biological data. | 566 |
 teichlab/gpfates | Software to model transcriptional cell fates as mixtures of Gaussian Processes | 19 |
 sigven/pcgr | Software tool for annotating and interpreting cancer genome data to support precision oncology | 254 |
 comphist/norma | A tool for normalizing spelling in non-standard language data by combining multiple techniques with training data and a target dictionary. | 20 |
 nsalomonis/altanalyze | An automated cross-platform workflow for RNA-Seq gene and splicing analysis | 99 |