ZIFA
Dimensionality reducer
An algorithm for dimensionality reduction in single-cell gene expression data with reduced computational efficiency and increased reliability for large datasets.
Zero-inflated dimensionality reduction algorithm for single-cell data
107 stars
8 watching
23 forks
Language: Python
last commit: over 4 years ago
Linked from 1 awesome list
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
 vyraun/half-size | An algorithm to reduce word embeddings to a specified size while maintaining performance | 128 |
 beringresearch/ivis | A dimensionality reduction framework using a Siamese Neural Network to visualize high-dimensional datasets | 332 |
 mljs/pca | Tool for reducing dimensionality of data by identifying and preserving the most informative directions. | 98 |
 ziyin-dl/word-embedding-dimensionality-selection | An implementation of dimensionality selection procedure for word embeddings in various algorithms. | 329 |
 xarray-contrib/xeofs | Tools for dimensionality reduction in climate science data analysis | 109 |
 jhu99/scbean | Analyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq | 16 |
 epistasislab/scikit-mdr | An algorithm for feature construction that models higher-order interactions and captures complex patterns in data sets | 126 |
 yingfanwang/pacmap | A dimensionality reduction method that preserves both local and global structure of the data in original space | 556 |
 yoseflab/fastproject | Provides tools and methods for visualizing and analyzing single cell RNA-seq data in low dimensions | 35 |
 xiaoyang-rebecca/patternrecognition_matlab | An investigation into feature reduction and classification methods for pattern recognition using various techniques such as PCA, LDA, and SVM. | 71 |
 zji90/sepa | A tool for analyzing single-cell RNA-seq data to identify gene expression patterns and perform GO enrichment analysis. | 4 |
 zjufanlab/scdeepsort | A tool for accurately annotating cell types in single-cell RNA sequencing data using deep learning | 99 |
 andylamp/federated_pca | An algorithm for performing dimensionality reduction on decentralized data with differential privacy guarantees | 39 |
 dfajar2/bigscale | An analytical framework for single cell data analysis | 1 |
 zhangxiaoyu11/omivae | An end-to-end deep learning model for extracting low-dimensional latent spaces and classifying multi-class data from large omics datasets | 31 |