pathml

Pathology analysis toolkit

A toolkit for computational pathology that provides tools and frameworks for analyzing biomedical images and data

Tools for computational pathology

GitHub

392 stars
13 watching
84 forks
Language: Python
last commit: 15 days ago
Linked from 1 awesome list

biomedical-image-processingcomputational-pathologydeep-learningdigital-pathologyfluorescence-microscopy-imaginghistopathologyimage-analysismachine-learningmicroscopypathmlpathologypythonpytorchresearchspatial-transcriptomics

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
aican-research/fast-pathology An open-source software framework for deep learning-based digital pathology 122
zudi-lin/pytorch_connectomics A deep learning framework for automatic and semi-automatic segmentation of 3D image stacks in connectomics 171
dissectmalware/officeforensictools A Python-based collection of tools for gathering forensic information from Office documents 26
aphp/eds-scikit A Python library providing tools to process and analyze standardized clinical data from healthcare databases 35
kaiyangzhou/dassl.pytorch A PyTorch toolbox for supporting research and development of domain adaptation, generalization, and semi-supervised learning methods in computer vision. 1,217
pycroscopy/atomai A PyTorch-based package for analyzing microscopy data with machine learning algorithms 194
media-smart/vedaseg A PyTorch-based toolbox for building and training semantic segmentation models 410
zhanghang1989/pytorch-encoding A Python framework for building deep learning models with optimized encoding layers and batch normalization. 2,041
juntang-zhuang/laddernet A deep learning implementation of a multi-path network architecture for medical image segmentation 139
perone/medicaltorch A framework for building deep learning models on medical imaging data 851
google/turbinia Automates and scales digital forensic processing workflows to handle large amounts of evidence in the cloud. 750
pyg-team/pytorch-frame A deep learning framework for handling heterogeneous tabular data with diverse column types 543
poldrack/narps A repository providing code and tools for analyzing neuroimaging data to improve replication and prediction in neuroscientific research. 34
pjrinaldi/wombatforensics A multi-threaded GUI forensic analysis tool for Linux 47
speedinghzl/pytorch-segmentation-toolbox Provides PyTorch implementations of deep learning models for semantic segmentation 772