bam_realignment-nf
by IARCbioinfo
bam realignment with samtools, bwa and sambamba
AI summary
BAM realigner
An automated BAM realignment pipeline using samtools, bwa and sambamba.
- stars
- 1
- forks
- 1
- watching
- 4
- awesome list
- 1
Similar projects
Found by comparing what the projects do, not just their names.
GVCF generator
Generates GVCF from BAM files using GenomeAnalysisTK with realignment and recalibration steps
Metrics calculator
Tools for computing average metrics from reads overlapping given positions
Resource modifier
Modifies existing resource definitions in place without requiring new resources to be created
Buffer switcher
A minimal Neovim buffer switcher with an interactive window display.
Blob manager
A utility for managing blob files across multiple platforms
Renamer
Provides an incremental LSP renaming feature with real-time visual feedback.
Haplotype caller
Automates the process of haplotype calling from genotyped BAM files using GATK4
Memory mapper
Provides memory mapping functionality for a V-lang compiler
RAM manager
Automates the stopping and starting of language-server clients to reclaim RAM when not in use.
Serializer
A binary serialization framework for Nim
Data format library
Provides access to common file formats used in high-throughput sequencing data
Real-world app
A real-world application built with Imba showcasing CRUD operations and other features
nsacyber/bam156
Binary Analyzer
A tool that gathers and analyzes information about Windows updates, binaries, and symbols to aid in their analysis.
Variant caller
A Nextflow-based pipeline for somatic variant calling using mutect
Configurator
A Neovim framework and configuration manager for building customized editing environments
Featured in 1 awesome list
Each link jumps to the spot where the list mentions bam_realignment-nf.
