aradeepopsis
Plant image analyzer
A tool for extracting phenotypic measurements from plant images using deep learning and computer vision techniques
A versatile, fully open-source pipeline to extract phenotypic measurements from plant images
41 stars
6 watching
8 forks
Language: Nextflow
last commit: over 2 years ago
Linked from 1 awesome list
arabidopsis-thalianadeep-learningnextflowplant-phenotypingscikit-imagesemantic-segmentationtensorflow
hallvaaw/awesome-biological-image-analysisRelated projects:
| Repository | Description | Stars |
|---|---|---|
 computational-plant-science/dirt | Automated high-throughput root phenotyping platform using image processing and machine learning algorithms. | 25 |
 danforthcenter/plantcv | An image analysis software package for plant phenotyping, providing a modular architecture and flexible workflow for various analysis techniques. | 671 |
 predictivephenomics/rhizovisionexplorer | An image analysis software for extracting plant root features from images | 14 |
 abe404/root_painter | An open-source tool for training deep learning models for image analysis | 59 |
 lukasvalentin/obia4rtm | An object-based image analysis tool for plant parameter retrieval from radiative transfer models using satellite data. | 20 |
 jberry47/ddpsc_phenotypercv | A header-only C++11 library that provides image processing functionality for plant phenotyping using OpenCV. | 4 |
 opendronemap/fieldimager | A package to analyze orthomosaic images from agricultural field trials and extract relevant information | 243 |
 eco-hydro/phenofit | A package for extracting vegetation phenology from remote sensing data using machine learning and optimization techniques. | 75 |
 pycroscopy/atomai | A PyTorch-based package for analyzing microscopy data with machine learning algorithms | 197 |
 jgrss/cultionet | A deep learning library for image segmentation of cultivated land from satellite data | 27 |
 kreshuklab/plant-seg | A tool for cell instance aware segmentation in densely packed 3D volumetric images | 101 |
 csailvision/gandissect | Visualizes and understands internal representations of generative adversarial networks (GANs) to analyze their behavior and improve performance. | 1,770 |
 p2irc/deepplantphenomics | A Python-based platform for plant phenotyping using deep learning and neural networks. | 136 |
 apburt/treeseg | Extracts individual trees from high-density lidar point clouds using machine learning and computer vision techniques | 216 |
 jliemansifry/semantic-segmentation | Develops deep learning models to classify and annotate pixel-level details in satellite images | 21 |