ceLLama
Cell annotator
Automates cell type annotation using large language models and provides extensive customized reports
Cell type annotation with local Large Language Models (LLMs) - Ensuring privacy and speed with extensive customized reports
143 stars
4 watching
6 forks
Language: R
last commit: 29 days ago
Linked from 1 awesome list
celltypelarge-language-modelsllmrna-seqscanpyseuratsingle-cell
Related projects:
Repository | Description | Stars |
---|---|---|
omicsml/cellplm | An open-source pre-trained language model for analyzing cell types from single-cell data | 67 |
zjufanlab/sccatch | Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes | 218 |
zjufanlab/scdeepsort | A tool for accurately annotating cell types in single-cell RNA sequencing data using deep learning | 99 |
mahmoodlab/maps | A machine learning framework for annotating cell types from spatial proteomics data | 48 |
vanvalenlab/cellsam | A Python library providing inference code for a foundation model of cell segmentation using PyTorch. | 53 |
gcballesteros/notebooknavigator.nvim | Tool for navigating and executing code cells in an editor | 199 |
mathewchamberlain/signacx | Classifies cellular phenotype from single-cell RNA sequencing data using neural networks trained on bulk gene expression data. | 23 |
jubnzv/virtual-types.nvim | A Neovim plugin that displays type annotations in virtual text | 375 |
klarman-cell-observatory/scsva | Software package for interactive analysis and visualization of large single-cell omics datasets | 25 |
cytomining/cytominer | Software for preprocessing and analyzing large cell profiling datasets | 49 |
antoniodefalco/scevan | Automated tool for classifying cells in scRNA data and inferring copy number profiles of malignant cells. | 93 |
felko/ton-lang | A visual programming language implemented as a cellular automaton | 63 |
scverse/scvi-tools | Probabilistic analysis tools for single-cell omics data | 1,251 |
kurama622/llm.nvim | An extension for Neovim that integrates with large language models to provide tools for text translation, code explanation and optimization. | 47 |
s-kostyaev/ellama | A tool for interacting with large language models from Emacs. | 548 |