scAAnet
archetypal analysis tool
A deep learning-based framework for analyzing single-cell RNA-seq data
Single-cell archetypal analysis neural network
14 stars
1 watching
1 forks
Language: Jupyter Notebook
last commit: over 2 years ago
Linked from 1 awesome list
archetypalautoencodersingle-cell
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
| aprilyuge/respan | A Python package implementing a deep learning model for batch correction in single-cell RNA sequencing data | 13 |
 angelolab/ark-analysis | A toolset for analyzing multiplexed imaging data by applying various machine learning and image processing techniques to segment cells, cluster pixels, and perform spatial analysis. | 76 |
 zjufanlab/scdeepsort | A tool for accurately annotating cell types in single-cell RNA sequencing data using deep learning | 99 |
 rglab/mast | Provides tools and methods for analyzing single-cell RNA sequencing data using statistical models | 228 |
| zjufanlab/sccatch | Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes | 218 |
 rabadanlab/sctda | An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations | 7 |
 cellgeni/scrna.seq.course | An educational resource teaching computational analysis of single-cell RNA-seq data using R and Bioconductor tools | 123 |
 kharchenkolab/numbat | Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells | 166 |
 bowang-lab/scgpt | A Jupyter Notebook-based framework for training and applying generative AI models to single-cell multi-omics data | 1,039 |
 robertaboukhalil/ginkgo | An analysis tool for single-cell copy-number variation data from sequencing experiments. | 47 |
 yunshun/singlecellworkshop | An educational workshop on single-cell RNA-seq analysis using the Seurat R package | 0 |
 scverse/scvi-tools | Probabilistic analysis tools for single-cell omics data | 1,251 |
 jhu99/scbean | Analyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq | 16 |
 dtm2451/dittoseq | A suite of functions for analyzing and visualizing RNA sequencing data | 190 |
 rams3sh/aaia | Tools for visualizing and analyzing AWS IAM and Organizations in a graph format with Neo4j | 288 |