awesome-open-science
A curated list of resources, data, tools, scholarship related to Open Access, Data and Open Science
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Science resources
A curated list of resources and tools for promoting data sharing, collaboration, and transparency in scientific research
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What's in the list
122 links in 11 sections, with live GitHub stats.activeno commit in 2y
Research Data
- BASE
Biefeld academic search engine
- Academia
Academia.edu is a platform for academics to share research papers
- Research Gate
ResearchGate is the professional network for scientists and researchers
Research Articles and Reports
- Research Objects: Towards Exchange and Reuse of Digital Knowledge
Bechhofer et al., 2010
- The data paper: a mechanism to incentivize data publishing in biodiversity science
Chavan and Penev, 2011
- Data sharing in neuroimaging research
Poline et al., 2012
- Toward interoperable bioscience data
Sansone et al., 2012
- Making data sharing count: a publication-based solution
, Gorgolewski et al., 2013
- EUDAT: A New Cross-Disciplinary Data Infrastructure for Science
Lecarpentier et al., 2013
- Data reuse and the open data citation advantage
Piwowar and Vision, 2013
- Nine simple ways to make it easier to (re)use your data
White et al., 2013
- The data sharing advantage in astrophysics
Dorch et al., 2015
- What Drives Academic Data Sharing?
Fecher et al., 2015
- Making data count
Kratz and Strasser, 2015
- The center for expanded data annotation and retrieval
Musen et al., 2015
- Public Data Archiving in Ecology and Evolution: How Well Are We Doing?
Roche et al., 2015
- The State of Open Data Report
Treadway et al., 2016
- The FAIR Guiding Principles for scientific data management and stewardship
Wilkinson et al., 2016
- Code of practice for research data usage metrics release 1
Fenner et al., 2018
- Open Data as Open Educational Resources: Towards Transversal Skills and Global Citizenship
Atenas, Havemann, Priego, 2015
- Power failure: why small sample size undermines the reliability of neuroscience
, Button et al., 2013
- Ten simple rules for reproducible computational research
, Sandve et al., 2013
- Investigating Variation in Replicability: A "Many Labs" Replication Project
, Klein et al., 2014
- An introduction to Docker for reproducible research
, Boettiger, 2015
- Opinion: Reproducible research can still be wrong: Adopting a prevention approach
, Leek and Peng, 2015
- The GRIM test: A simple technique detects numerous anomalies in the reporting of results in psychology
, Brown and Heathers, 2016
- What does research reproducibility mean?
, Goodman et al., 2016
- Tools and techniques for computational reproducibility
, Piccolo and Frampton, 2016
- Transparency, Reproducibility, and the Credibility of Economics Research
, Christensen and Miguel, 2017
- A trust approach for sharing research reagents
, Edwards et al., 2017
- Estimating the Reproducibility of Psychological Science
, Nosek et al., 2017
- Digital Open Science -- Teaching digital tools for reproducible and transparent research
, Toelch and Ostwald, 2017
- Terminologies for reproducible research
, Barba, 2018
- An introduction to statistical and data sciences via R
, Ismay and Kim, 2018
- Our path to better science in less time using open data science tools
, Lowndes et al. 2017
- Computational Reproducibility via Containers in Social Psychology
, Green and Clyburne-Sherin, 2018
- Developer Survey Results 2019
, stackoverflow, 2019
Tools
- Sci-Hub
Research Paper File Sharing Platform
- Galaxy
Reproducible Research environments
- Amazon Web Services
(AWS), Cloud-based software environments
Software Citation Tools
Mozilla Science Lab
- Open Science, Open Data, Open Source
Fernandes and Vos, 2017
Tools / Open Science Framework (COS)
- Reproducible Research, Workshop
CC-BY, April Clyburne-Sherin & Courtney Soderberg
Tools
- Initial steps towards reproducible research
Karl Broman
The Open Science and Reproducible Research course
CC-BY, Christie Bahlai
- Reproducibility Workshop
Best practices and easy steps to save time for yourself and other researchers,
- Reproducible Research using Jupyter Notebooks workshop
, The Carpentries
R markdown workshop
, (Liberate Science)
- ReproZip
, an Open source tool for full computational reproducibility
- Software Carpentry
and lessons
- Jupyter notebooks
and , ,
rrtools: Tools for Writing Reproducible Research in RTools / Virtual Machines:
- Binder Documentation
for creating custom computing environments that can be shared and used by multiple remote users
- Statcheck
, GRIM
- Scienceroot
the first blockchain-based scientific ecosystem
- Lando
A local development and DevOps tool for all your projects
- Podman
Podman is a daemonless container engine for developing, managing, and running OCI Containers on your Linux System
BinderHubTools / Online repositories for open hardware:
- Bio-protocol
a peer reviewed protocol journal
- BMJ Open Science
a new journal that aims to improve the transparency, integrity and reproducibility of biomedical research
- Improving your statistical inferences
Daniel Lakens
- Open Stats Lab
Kevin McIntyre
- Nextflow
open source tool than enables reproducible and portable computational workflows across cloud and clusters
Organizations
- OpenScienceMOOC
Community organisation for the development of an Massive Open Online Community for Open Science
- Eclipse Science
Open source and collaboration for computational science
- Mozilla Science
A community of researchers, developers, and librarians making research open and accessible
- Research Data Alliance
(RDA) is a community-driven organization supported by the European Commission, the United States Government's National Science Foundation and National Institute of Standards and Technology, and the Australian Government’s Department of Innovation with the goal of building the social and technical infrastructure to enable open sharing of data
- The Software Sustainability Institute
Cultivate better, more sustainable, research software to enable world-class research
- Openscience.org
Supports the development of open scientific software, in particular for cheminformatics
- NumFOCUS
Open-code, better science. Non-profit organization that promotes sustainable high-level programming languages, open code development, and reproducible scientific research
- Center for Open Science
Community for open science that also provides research and data software tools
Courses
Books
- Opening Science
The Evolving Guide on How the Web is Changing Research, Collaboration and Scholarly
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