awesome-open-science
by silky
some links to projects/tools related to "open science".
AI summary
Open Science Tools
A curated list of tools and projects related to open science, including computation environments, peer-review, document writing, discovery, data management, reproducibility, project management, and training resources.
- stars
- 151
- forks
- 15
- watching
- 16
- awesome lists
- 4
- entries
- 28
What's in the list
28 links in 11 sections, with live GitHub stats.activeno commit in 2y
computation environments
- IPython Notebook
(evolving into ): A browser-based notebook with support for code, rich text, mathematical expressions, inline plots and other rich media
- Maxima
: A computer algebra system developed in Lisp for (symbolic) mathematical computations
- Sage Math Cloud
: Provides Sage, Python, and other environments for computing on the cloud; also provides terminal access and git commands for cloning repositories
peer-review
- Hypothes.is
: Steps towards annotating and peer-reviewing the Web
document writing
- Authorea
: Backed by Pandoc and Git for collaborative document writing
- ShareLaTeX
: Online collaborative LaTeX editor
- WriteLaTeX
: Online collaborative LaTeX editor
discovery
data management
- Academic Torrents
: Publish large datasets as torrents
- Dat-Data
: Dat is an open source project that provides a streaming interface between every file format and data storage backend
reproducibility
- Code as a Research Object
: Assign a DOI to your code and make it citable
- Figshare
: Platform for making research artefacts uploadable and citable
- Reproduced papers
: Collection of links to various researchers reproducing particular papers
- Zenodo
: Platform to host versions of code that can be cited; can be linked to GitHub
- steps towards reproducible research
: A tutorial/best practices for making your research reproducible
project management
- GitHub
: (Naturally.)
- Open science framework
: Collect together various sources (GitHub, DropBox, etc) into one spot
- Trello
and (open source self-hosted alternative): Keep track of to-do items in various lists of lists; keep track of figures, comments, questions, issues, etc
organisations
journals/preprint servers
training/meetups
community wikis
- Complexity Zoo
: Definitions of complexity classes in theoreticaly computer science
- nLab
: A wiki-lab for collaborative work on Mathematics, Physics and Philosophy — especially from the n-point of view: insofar as these subjects are usefully treated with tools and notions of category theory or higher category theory
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Featured in 4 awesome lists
Each link jumps to the spot where the list mentions awesome-open-science.