cloud-volume
Volumetric data client
Provides a Python client for accessing and manipulating precomputed volumetric data in Neuroglancer format from cloud storage.
Read and write Neuroglancer datasets programmatically.
135 stars
29 watching
48 forks
Language: Python
last commit: 11 days ago
Linked from 1 awesome list
big-databiomedical-image-processingchunked-imagecloudconnectomicselectron-microscopygcslarge-imagematrixmeshmicroscopymicroscopy-imagesneuroglancernumpypythons3serverlessskeletonstensorvolumetric-data
hallvaaw/awesome-biological-image-analysisRelated projects:
| Repository | Description | Stars |
|---|---|---|
 google/neuroglancer | A web-based viewer for volumetric data visualization. | 1,109 |
 yangrc1234/volumecloud | A Unity3D plugin for rendering cloud using raymarch | 641 |
 brainglobe/brainrender | A Python package to visualize neuroanatomical data in 3D | 553 |
| seung-lab/watershed.jl | A Julia implementation of hierarchical watershed segmentation from an affinity graph associated with a 3D image | 3 |
| brainglobe/brainglobe-atlasapi | A Python interface to access neuroanatomical atlases from multiple sources. | 128 |
 google-research/tf-slim | A lightweight library for defining and training neural networks in TensorFlow. | 373 |
 equinor/segyio | A fast Python library for reading and writing seismic data formats | 494 |
 nengo/nengo | A Python library for building and simulating large-scale neural models | 834 |
 nlgranger/seqtools | A Python library to manipulate and transform indexable data | 49 |
 bluebrain/morphio | A C++ library for reading and writing neuronal morphology data in various file formats. | 27 |
| brainglobe/cellfinder | Automated 3D cell detection tool for large images in microscopy and neuroscience research | 181 |
| brainglobe/brainreg | Automated 3D brain registration software for aligning template brains to sample images. | 124 |
 natverse/nat | An R package for visualizing and analyzing 3D biological image data | 64 |
 cgre-aachen/gemgis | A Python-based library for simplifying access to spatial data processing for geological modeling and subsurface data analysis. | 264 |
 scille/umongo | A Python library for interacting with MongoDB using object-document mapping and asynchronous support | 447 |