brainrender

brainglobe/brainreg124

Brain aligner

Automated 3D brain registration software for aligning template brains to sample images.

brainglobe/brainglobe-atlasapi128

Atlas API

A Python interface to access neuroanatomical atlases from multiple sources.

brainglobe/cellfinder181

Cell detector

Automated 3D cell detection tool for large images in microscopy and neuroscience research

natverse/nat64

NeuroImage Viewer

An R package for visualizing and analyzing 3D biological image data

bluebrain/morphio27

Neuronal data loader

A C++ library for reading and writing neuronal morphology data in various file formats.

bluebrain/brayns291

Neuron viewer

A platform for large-scale scientific visualization of neurons using ray-tracing and interactive rendering.

nilearn/nilearn1.2K

Brain analysis library

A comprehensive toolkit for analyzing brain imaging data using machine learning and statistical techniques.

knossos-project/knossos74

Neural visualization tool

A software tool for visualizing and annotating 3D image data to reconstruct neural morphology and connectivity.

nengo/nengo834

Neural simulator

A Python library for building and simulating large-scale neural models

catalyst-team/neuro19

Brain Segmentation Pipeline

A 3D brain segmentation pipeline using Python and the Catalyst framework.

google/neuroglancer1.1K

Volumetric viewer

A web-based viewer for volumetric data visualization.

yanwu2014/swne105

Biological data visualization tool

A method and library for visualizing high-dimensional biological datasets using dimensionality reduction techniques.

rraadd88/parag2

Graph visualizer

A Python package for interactive visualization of higher-order graphs in various fields.

yulab-smu/ggtree847

Phylo visualization tool

A tool for visualizing and annotating phylogenetic trees with associated data

rowanz/neural-motifs526

Scene Graph Parser

A software framework for scene graph parsing with global context using PyTorch and Visual Genome data.