SNT

Neuronal analyzer

A Java framework for semi-automated tracing and analysis of neuronal morphology from microscopy images

The ImageJ framework for quantification of neuronal anatomy

GitHub

42 stars
6 watching
18 forks
Language: Java
last commit: 6 days ago
Linked from 1 awesome list

imagejimagej2janelianeuroanatomy-toolboxneuronsneurosciencescijava

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
natverse/nat An R package for visualizing and analyzing 3D biological image data 64
rivuletstudio/rivuletpy Automates 3D neuron tracing and tree structure extraction from medical images using the Rivulet2 algorithm 66
nmtimme/neuroscience-information-theory-toolbox A toolbox for performing information theory analyses of neuroscience data 69
neuralegion/shainet A neural network implementation using object-oriented modeling and inspired by biological systems 183
jeshraghian/snntorch A Python package for training spiking neural networks with gradient-based learning 1,347
lmthang/nmt.matlab Provides code to train state-of-the-art Neural Machine Translation systems using Matlab 105
harvardnlp/seq2seq-attn An implementation of a sequence-to-sequence model with attention mechanism using LSTMs and character embeddings for neural machine translation 1,260
adalca/neurite A comprehensive neural networks toolbox focused on medical image analysis using TensorFlow and Keras. 340
nilearn/nilearn A comprehensive framework for machine learning and statistical analysis of neuroimaging data in Python. 1,188
molcik/python-neuron A Python library for implementing and training various neural network architectures 40
alexbrillant/multi-layer-perceptron An implementation of a multi-layer neural network in Python, allowing users to train and use the network for classification tasks. 5
neulab/word-embeddings-for-nmt An open source project that provides pre-trained word embeddings and a dataset for evaluating their usefulness in neural machine translation. 121
brainglobe/brainrender A Python-based software for visualizing neuroanatomical and morphological data in 3D. 547
jonsafari/nmt-list A comprehensive catalog of various neural machine translation implementations using different deep learning frameworks. 359
simonkohl/probabilistic_unet Reimplementation of a neural network model for conditional segmentation of ambiguous images 546