awesome-open-science-software

Experiment tools

A curated list of resources and tools supporting reproducible experiments in software development

awesome open list of pointers about open science for software and computational science

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Awesome open science for software and computational science / Community
Eclipse Science : open source and collaboration for computational science
Mozilla Science is a community of researchers, developers, and librarians making research open and accessible
Research Data Alliance (RDA) is a community-driven organization supported by the European Commission, the United States Government's National Science Foundation and National Institute of Standards and Technology, and the Australian Government’s Department of Innovation with the goal of building the social and technical infrastructure to enable open sharing of data
The Software Sustainability Institute 's mission is to cultivate better, more sustainable, research software to enable world-class research
Openscience.org supports the development of open scientific software, in particular for cheminformatics
NumFOCUS Open-code, better science. Non-profit organization that promotes sustainable high-level programming languages, open code development, and reproducible scientific research

Awesome open science for software and computational science / Software as Experimental Tool
Result and Artifact Review and Badging (ACM)
IEEE Workshop on The Future of Research Curation and Research Reproducibility (Nov 2016)
Dagstuhl Workshop: Rethinking Experimental Methods in Computing (March 2016) (organized by D. Delling, C. Demetrescu, D. Johnson, J. Vitek)
Dagstuhl Workshop: Artifact Evaluation for Publications (Nov 2015) (organized by B. Childers, G. Fursin, S. Krishnamurthi, A. Zeller)
Dagstuhl Workshop: Engineering Academic Software Dagstuhl Workshop (June 2016) (organized by C. Goble, J. Howison, C. Kirchner, O. Nierstrasz)
Artifact evaluation (artifact-eval.org) (maintained by ) discusses availability of experimental data and reproducibility of experiments
Artifact Evaluation at ISSTA'16
The Reproducible Science Project (reproduciblescience.org) is a joint-project by New York University, the University of California, Berkeley and the University of Washington to promote open-science
ReScience journal The is a peer-reviewed journal that targets computational research and encourages the explicit replication of already published research, promoting new and open-source implementations in order to ensure that the original research is reproducible
Enhancing reproducibility for computational methods (Science, Dec 2016, Vol. 354)
Journal of Open Source Software - JOSS The Journal of Open Source Software (JOSS) is a journal for research software packages. JOSS papers enable citation of research software packages with a DOI
Streamlining the Inclusion of Computer Experiments In a Research Paper , IEEE Computer, vol 55. no. 11, November 2018
Depsy helps build the software-intensive science of the future by promoting credit for software as a fundamental building block of science
CodeMeta The CodeMeta project proposes a way to have structured metadata for research software
code-ini 0 over 3 years ago Code meta data via .ini files

Awesome open science for software and computational science / Software as Research Object
Software Heritage project collects and preserves software. The project motivation is that "software embodies our technical and scientific knowledge and humanity cannot afford the risk of losing it." (project lead by Roberto Di Cosmo)
tera-PROMISE Research dataset repository specializing in software engineering research datasets
Zenodo operated by CERN, contains several collections about software data:

Awesome open science for software and computational science / Software as Research Object / Zenodo
Software Engineering Artifacts Can Really Assist Future Tasks
Empirical Software Engineering
Mining Software Repositories

Awesome open science for software and computational science / Software as Research Object
Data Archiving and Networked Services - DANS (The Netherlands)
Awesome-msr 419 almost 4 years ago : curated repository of software engineering data sets
Evaluate Collaboratory The (managed by ) is a hub for everybody interested in understanding and improving the state of practice in experimental evaluation in software science
Github group "opensciences" The (initiated by Tim Menzies) contains the source of , which is an "open science for software engineering portal"
SoftwareEngineeringToolDemos This Github group gathers software prototypes associated with software-engineering publications (maintained by and his students)

Awesome open science for software and computational science / Software Support for Open Science
IEEE DataPort is an open repository of datasets hosted by IEEE
Dataverse 882 6 days ago A data repository framework to share and publish research data
Code as a Research Object is a prototype integration between Github and figshare
dokieli is a client-side editor for decentralised article publishing, annotations and social interactions for science. Its is open source under the Apache License, Version 2.0. Maintained by ( ) et al
Open Science Framework (OSF.io) provides project management support for researchers across the entire research lifecycle. Developed by the
Anonymous Github 1,476 about 1 month ago is a system to anonymize open-science Github repositories before referring to them in a double-blind paper submission
recipy 438 almost 3 years ago records provenance for Python programs
shournal 173 3 months ago records provenance on the shell. It provides the exact command which created a given file
codeocean Code Ocean is a cloud-based computational reproducibility platform to run scientific code
LabPal is a Java library that allows you to design, control, process and package experiments that are run on a computer, and to streamline the integration of results within a research paper
OpenChrom is a cross-platform chromatography data analysis tool with support for both proprietary vendor formats and open alternatives to publish as FAIR data

Awesome open science for software and computational science / Courses
"Tools for reproducible research" Swedish PhD course . It gives very good pointers
Coursera MOOC on Reproducible Research

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