bioruby-pipengine

Pipeline runner

An ultra light YAML-based pipeline execution engine for biological data analysis pipelines

An ultra light YAML-based pipeline execution engine

GitHub

20 stars
5 watching
3 forks
Language: Ruby
last commit: about 7 years ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

Repository Description Stars
jacob3141/qtruby Allows C++/Qt applications to execute Ruby code seamlessly 2
databiosphere/toil A workflow management system designed to efficiently run pipelines in various environments. 901
yellowapple/rubix A minimal Ruby interpreter wrapper for Elixir 3
bjpop/rubra A bioinformatics pipeline system that supports running workflow stages on a distributed compute cluster. 38
kirillseva/ruigi A tool for designing and managing data processing pipelines in R. 42
thbar/kiba A Ruby-based framework for defining and running reliable, concise, and maintainable ETL jobs 1,754
ropensci/targets A tool for creating reproducible data science pipelines in R. 940
hadrieng/pipelines A collection of reusable computational pipelines for bioinformatics tasks. 2
gabriella439/pipes A lightweight stream processing library that builds and connects reusable streaming components using Haskell 489
oconnor663/duct.rs A library for running child processes in Rust, providing tools for building pipelines and handling errors and input/output. 829
kakaobrain/torchgpipe A PyTorch-based library for efficient training of large neural networks using pipeline parallelism and automatic recomputation of gradients. 817
druths/xp A tool for creating flexible and self-documenting data science pipelines 56
mumuki/mumuki-ruby-runner An application that runs Rspec tests within a Sinatra-based server 4
ros-perception/image_pipeline A ROS package providing an image processing pipeline 800
ypares/porcupine A tool that enables data manipulation and analysis pipelines to be flexible, reusable, and reproducible in different environments 89