paraMSA
Phylogenetic tree generator
Generates and evaluates phylogenetic trees with improved accuracy by combining multiple sequence alignments from different aligners.
Using uncertainty in multiple sequence alignments for phylogenetic trees and bootstrap support values
4 stars
1 watching
4 forks
Language: HTML
last commit: almost 7 years ago
Linked from 1 awesome list
nextflow-io/awesome-nextflowRelated projects:
| Repository | Description | Stars |
|---|---|---|
| evanfloden/conctree | Software tool for constructing phylogenetic trees from multiple sequence alignments and incorporating alignment uncertainty into support values. | 6 |
 yulab-smu/ggtree | A tool for visualizing and annotating phylogenetic trees with associated data | 847 |
 shawnlaffan/biodiverse | Analyzes spatial relationships between species diversity and their environments | 75 |
 yohasebe/rsyntaxtree | Generates graphical syntax trees for linguistic research using Ruby | 102 |
 canopytax/asyncpgsa | A library that wraps asyncpg to enable use with SQLAlchemy | 416 |
| evanfloden/vast-tools-nf | A Nextflow implementation of VAST-TOOLS for profiling alternative splicing events in RNA-Seq data | 5 |
 evanwy/carlasemseg | Automated image segmentation algorithm for autonomous driving research using the Carla dataset | 8 |
 yunlongdong/fcn-pytorch | A PyTorch implementation of FCN for semantic segmentation with an easy-to-use interface and pre-trained models. | 161 |
 arklumpus/treeviewer | A software tool for visualizing and manipulating phylogenetic trees | 196 |
 weecology/deeptreeattention | An implementation of a deep learning model for tree species classification from hyperspectral images | 120 |
 coder-spirit/beautiful-tree | A lightweight JavaScript library to generate SVG images of trees. | 17 |
 mfussenegger/nvim-treehopper | A plugin that provides region selection with hints on the abstract syntax tree of a document. | 438 |
| weecology/neontreeevaluation | A dataset and tools for evaluating tree detection algorithms on multisensor aerial imagery | 136 |
 jespermaag/gganatogram | An R package for visualizing anatograms of different organisms based on tissue coordinates from publicly available data sources. | 384 |
 tum-ens/pygreta | Generates high-resolution potential maps and time series for renewable energy sources | 41 |