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awesome-hpc

by dstdev

awesome listpushed about 2 years ago

A collection of Awesome HPC software and tools

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HPC suite

A collection of tools and resources for building high-performance computing systems

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What's in the list

115 links in 23 sections, with live GitHub stats.activeno commit in 2y

Provisioning

  • Grendel

    Bare Metal Provisioning system for HPC Linux clusters ( )

  • XCat

    xCAT is a toolkit for deployment and administration of clusters of all sizes ( )

  • Warewulf

    Warewulf is a stateless and diskless container operating system provisioning system for large clusters of bare metal and/or virtual systems ( )

  • Rocks

    A Linux distribution for developing Linux clusters

  • Cobbler

    Cobbler is a Linux installation server that allows for rapid setup of network installation environments ( )

  • Base Command Manager

    Base Command Manager allows administrator to quickly build and manage heterogeneous clusters

  • Scyld

    Scyld Clusterware Scyld ClusterWare is developed based on the continuing evolution of Beowulf clusters first developed at NASA in the 1990s

  • BlueBanquise

    BlueBanquise is an open source cluster deployment and management stack built on Python and Ansible ( )

Workload Managers

  • Slurm

    A free and open source job scheduler ( )

  • LSF

    A job scheduler and workload management software developed by IBM

  • Moab

    Moab is a workload management and job scheduler

  • Torque

    Torque is a workload management and job scheduler

  • OpenLava

    OpenLava is a workload management and job scheduler

  • UGE/SGE

    Univa Grid Engine is a workload management engine for HPC

  • Volcano

    Volcano is a batch system built on Kubernetes

  • Maui

    Maui is a workload management and job scheduler

  • Kube Batch

    A batch scheduler of kubernetes for high performance workload, e.g. AI/ML, BigData, HPC

  • OpenPBS

    OpenPBS® software optimizes job scheduling and workload management in high-performance computing (HPC) environments ( )

Pipelines

  • Nextflow

    Data drive computational pipelines

  • Cromwell

    Scientific workflow engine designed for simplicity & scalability ( )

  • Pegasus

    A configurable system for mapping and executing scientific workflows over a wide range of computational infrastructure ( )

Applications

  • Spack

    A flexible package manager that supports multiple versions, configurations, platforms, and compilers ( )

  • EasyBuild

    EasyBuild - building software with ease ( )

Compilers

  • Nvidia

    NVIDIA HPC compiler suite for Fortran, C/C++ with OpenACC

  • Portland Group

    The Portland Group compilers were Fortran, C/C++ compilers now integrated into NVIDIA HPC SDK

  • Intel

    The Intel compiler suite offers many language compilers for use in the HPC space

  • Cray

    A suite of compilers designed and optimized to target the AMD interlagos instruction set

  • GNU

    The GNU Compiler Collection is a suite of compilers targeting many languages ( )

  • LLVM

    The LLVM project is a collection of modular compilers and toolchains ( )

MPI

  • OpenMPI

    OpenMPI is an open source implementation of the MPI-3.1 standard ( )

  • MPICH

    MPICH is a high-performance and widely portable implementation of the MPI-3.1 standard ( )

  • MVAPICH

    MVAPICH is an open source implementation of the MPI-3.1 standard developed by Ohio State University

  • Intel-MPI

    Intel-MPI is Intel's MPI-3.1 implementation included in their compiler suite

Parallel Computing

  • ArrayFire

    A general purpose tensor library that simplifies the process of software development for parallel architectures

  • OpenMP

    OpenMP is an application programming interface that supports multi-platform shared-memory multiprocessing programming

Benchmarking

  • OSU Benchmarks

    A collection of benchmarking tools for MPI developed by Ohio State University

  • Intel MPI Benchmarks

    A set of benchmarks developed by Intel for use with their Intel MPI

  • HPCC Systems

    HPCC Systems (High Performance Computing Cluster) is an open source, massive parallel-processing computing platform for big data processing and analytics ( )

  • LINPACK

    LINPACK is a set of efficient fortran subroutines for solving linear systems which benchmarks are useful for HPC

  • IOzone

    IOzone is a filesystem benchmark tool

  • IOR

    Interleaved or Random is a useful benchmarking tool for testing parallel filesystems

  • MDtest

    MDtest is an MPI-based application for evaluating the metadata performance of a file system

  • FIO

    Flexible I/O is an advanced disk benchmark that depends upon the kernel's AIO access library ( )

  • elbencho

    A distributed storage benchmark for files, objects & blocks with support for GPUs

Miscellaneous

  • OpenOnDemand

    Open OnDemand helps computational researchers and students efficiently utilize remote computing resources by making them easy to access from any device ( )

  • Open XDMod

    Open XDMoD is an open source tool to facilitate the management of high performance computing resources ( )

  • Coldfront

    ColdFront is an open source resource allocation system designed to provide a central portal for administration, reporting, and measuring scientific impact of HPC resources ( )

  • Pavilion2

    Pavilion is a Python 3 (3.6+) based framework for running and analyzing tests targeting HPC systems ( )

  • Reframe

    A powerful Python framework for writing and running portable regression tests and benchmarks for HPC systems. ( )

  • OLCF Test Harness

    The OLCF Test Harness (OTH) helps automate the testing of applications, tools, and other system software ( )

  • GoSlmailer

    Goslmailer is a drop-in notification delivery solution for slurm that can do slack, mattermost, teams, and more

Performance

  • TotalView

    TotalView is a debugging tool for HPC applications

  • Tau

    TAU Performance System® is a portable profiling and tracing toolkit for performance analysis of parallel programs written in Fortran, C, C++, UPC, Java, Python

  • Valgrind

    Valgrind is a tool designed to profile programs to determine memory leaks ( )

  • Paraver

    Paraver is a very flexible data browser that is part of the CEPBA-Tools toolkit

  • PAPI

    Performance Application Programming Interface (PAPI) is a performance analysis tool ( )

Parallel Shells

  • pdsh

    pdsh runs terminal commands across multiple hosts in parallel ( )

  • ClusterShell

    Scalable cluster administration Python framework ( )

Containers

  • Apptainer

    Apptainer is an open source container system ( )

  • Charliecloud

    Charliecloud provides user-defined software stacks (UDSS) for high-performance computing (HPC) centers ( )

  • Docker

    Docker is a set of platform as a service products that use OS-level virtualization to deliver software in packages called containers

  • uDocker

    A basic user tool to execute simple docker containers in batch or interactive systems without root privileges ( )

  • Shifter

    Shifter is Linux containers for HPC ( )

  • HPC Container Maker

    HPC Container Maker is an open source tool to make it easier to generate container specification files.

  • Scarus

    An OCI-compatible container engine for HPC

  • Singularity HPC

    Singularity Registry HPC (shpc) allows you to install containers as modules ( )

Environment Management

  • Lmod

    Lmod: An Environment Module System based on Lua, Reads TCL Modules, Supports a Software Hierarchy ( )

  • Environment Modules

    Environment Modules: provides dynamic modification of a user's environment ( )

  • Anaconda

    Anaconda is a Python and R distribution for use in computational science

  • Mamba

    Mamba is a reimplementation of the conda package manager in C++ ( )

Visualization

  • Visit

    VisIt - Visualization and Data Analysis for Mesh-based Scientific Data ( )

  • Paraview

    ParaView is an open-source, multi-platform data analysis and visualization application based on Visualization Toolkit (VTK) ( )

Parallel Filesystems

  • GPFS

    GPFS is a high-performance clustered file system software developed by IBM

  • Quobyte

    A high performance filesystem

  • Ceph

    Ceph is a distributed object, block, and file storage platform ( )

  • Weka

    A file system designed for HPC

  • Lustre/Exascaler

    Lustre is an open-source, distributed parallel file system software platform designed for scalability, high-performance, and high-availability ( )

  • BeeGFS

    BeeGFS is a hardware-independent POSIX parallel file system developed with a strong focus on performance and designed for ease of use, simple installation, and management

  • OrangeFS

    OrangeFS is a next generation parallel file system for Linux clusters ( )

  • MooseFS

    Moose File System is an Open-source, POSIX-compliant distributed file system developed by Core Technology ( )

Programming Languages

  • Julia

    Julia is a high-level, high-performance dynamic language for technical computing

  • Futhark

    Futhark is a purely functional data-parallel programming language in the ML family

  • Chapel

    Chapel is a programming language designed for productive parallel computing at scale

Monitoring / Prometheus Based

  • Slurm Exporter

    Prometheus exporter for performance metrics from Slurm

  • Slurm Exporter

    Slurm Exporter for Prometheus using Rest API

  • Infiniband Exporter

    The InfiniBand exporter collects counters from InfiniBand switches and HCAs

  • Cgroup Exporter

    Produces metrics from cgroups

  • Cgroup Exporter

    A Prometheus exporter for cgroup-level metrics

  • GPFS Exporter

    The GPFS exporter collects metrics from the GPFS filesystem

  • Lustre Exporter

    Prometheus exporter for use with the Lustre parallel filesystem

  • DCGM Exporter

    NVIDIA GPU metrics exporter for Prometheus leveraging DCGM

Journals

Podcasts

  • This week in HPC

    Each week, Intersect360 Research CEO Addison Snell and HPCwire editor Tiffany Trader dissect the week's top HPC stories

  • Exascaler Project

    ECP's Let's Talk Exascale podcast goes behind the scenes to chat with some of the people who are bringing a capable and sustainable exascale computing ecosystem to fruition

  • @HPCpodcast

    Join Shahin Khan and Doug Black as they discuss Supercomputing technologies and the applications, markets, and policies that shape them

Blogs

  • HPCWire

    Since 1987 covering the fastest computers in the world and the people who run them

  • InsideHPC

    insideHPC is a global publication recognized for its comprehensive and insightful coverage of the HPC-AI community, linking vendors, end-users and HPC strategists

  • The Next Platform

    Offers in-depth coverage of high-end computing at large enterprises, supercomputing centers, hyperscale data centers, and public clouds

  • The Register HPC

    The Register is a leading and trusted global online enterprise technology news publication, reaching roughly 40 million readers worldwide

  • HPC at Dell

    High-Performance Computing knowledge base articles from Dell

Conferences

  • Pearc

    Practice & Experience in Advanced Research Computing

  • Supercomputing (SC)

    The International Conference for High Performance Computing, Networking, Storage, and Analysis

  • Supercomputing International (ISC)

    The International Conference for High Performance Computing, Networking, Storage, and Analysis

  • CCGrid

    IEEE/ACM International Symposium on Cluster, Cloud and Internet Computing

  • IEEE-HPEC

    IEEE High Performance Embedded Computing

  • Hot Chips

    Semiconductor industry's leading conference on high-performance microprocessors and related circuits

  • Hot Interconnects

    IEEE conference on software architectures and implementations for interconnection networks of all scales

  • ESSA

    Workshop on Extreme-Scale Storage and Analysis

  • IEEE-IPDPS

    IEEE International Parallel & Distributed Processing Symposium

  • ESPM2 Workshop

    International Workshop on Extreme Scale Programming Models and Middleware

  • LCI Workshops

    The Linux Clusters Institute (LCI) is providing education and advanced technical training for the deployment and use of computing clusters to the high performance computing community worldwide

  • HPC Carpentry

    Teaching basic skills for high-performance computing

Websites

  • Top500

    The TOP500 project ranks and details the 500 most powerful non-distributed computer systems in the world

User Groups

  • MVAPICH

    The MUG conference provides an open forum for all attendees (users, system administrators, researchers, engineers, and students) to discuss and share their knowledge on using MVAPICH libraries

  • Slurm

    The annual Slurm user group meeting

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