 seams-core
 seams-core 
 Trajectory analyzer
 Analyzes molecular dynamics trajectories to infer structural properties of molecules
The d-SEAMS C++ core engine
35 stars
 5 watching
 10 forks
 
Language: C++ 
last commit: about 1 year ago 
Linked from   2 awesome lists  
  analysis-frameworkd-seamsluamolecular-dynamicsmolecular-dynamics-simulationnixtrajectoriestrajectory-analysis 
 Related projects:
| Repository | Description | Stars | 
|---|---|---|
|  | Tools for analyzing and processing molecular dynamics trajectory data | 139 | 
|  | Analyzes single-cell RNA-seq data to predict cell differentiation trajectories and associated transcription factors and genes. | 28 | 
|  | Analyzes single-cell measurements to infer morphing trajectories and their associated regulation. | 7 | 
|  | A tool to identify circular trajectories in scRNA-seq data using an autoencoder with sinusoidal activations | 20 | 
|  | An open-source library for analyzing molecular dynamics trajectories | 602 | 
|  | An R package and Python implementation for analyzing developmental trajectories in single-cell RNA sequencing data | 275 | 
|  | Supports the development and benchmarking of trajectory inference methods in single-cell biology | 72 | 
|  | Analyzes particle movement patterns over time to determine the mode of displacement and estimate parameters such as diffusion coefficient. | 36 | 
|  | A software package to identify regions of interest in single-cell differentiation trajectories | 5 | 
|  | An R package implementing an algorithm for inferring cell trajectories based on gene expression data | 12 | 
|  | An implementation of a multi-task deep morphological analyzer with neural models and post-processing tools for natural language processing tasks. | 1 | 
|  | Analyzes long non-coding RNA molecules from RNA-seq data | 34 | 
|  | Analyzes diffusion and contagion processes on networks using statistical analysis, visualization, and simulation. | 86 | 
|  | A tool for inferring genomic trajectories from expression data with environmental and genetic covariates | 10 | 
|  | Software tools for analyzing and visualizing trajectories and transformations in Matlab | 38 |