unistrap

chguiterman/dfoliatr7

Forest analysis tool

An R package for analyzing tree-ring data to identify insect defoliators and disturbances in forests

evanfloden/conctree6

Phylogenetic tree builder

Software tool for constructing phylogenetic trees from multiple sequence alignments and incorporating alignment uncertainty into support values.

shmh40/detectreergb35

Tree analysis software

A repository containing scripts and notebooks to analyze tree crown delineation from RGB imagery and LiDAR data, including methods for analyzing mortality rates and carbon stocks.

weecology/neontreeevaluation136

Tree detection benchmark

A dataset and tools for evaluating tree detection algorithms on multisensor aerial imagery

cbcrg/mta-nf2

Guide tree aligner

Automates multiple sequence alignment by evaluating and selecting the best guide tree variations

richfitz/diversitree32

Tree diverger

Analytical toolkit for comparing diversification patterns across phylogenetic trees

computational-plant-science/dirt25

Root analyzer

Automated high-throughput root phenotyping platform using image processing and machine learning algorithms.

weecology/deeptreeattention120

Tree classifier

An implementation of a deep learning model for tree species classification from hyperspectral images

vidalt/ba-trees64

Tree transformer

Transforms random forests into minimal-size trees with the same prediction function across the entire feature space.

hendrycks/robustness1K

Model robustness testing

Evaluates and benchmarks the robustness of deep learning models to various corruptions and perturbations in computer vision tasks.

kscanne/orthotree10

Language tree generator

A tool for generating large phylogenetic language trees based on orthographic distance

allometric/allometric68

Tree attribute predictor

An R package providing structured allometric models for predicting tree attributes

apburt/treeseg216

Tree segmentation tool

Extracts individual trees from high-density lidar point clouds using machine learning and computer vision techniques

pjaselin/cubist44

Rule-based regressor

A Python package implementing Quinlan's Cubist regression model for generating rule-based predictive models

chenhongge/robusttrees67

Robust decision trees

An implementation of robust decision tree based models against adversarial examples using the XGBoost framework.