GECKO
Biological modeling toolbox
A toolbox for incorporating enzyme constraints into genome-scale models of biological systems
Toolbox for including enzyme constraints on a genome-scale model.
66 stars
11 watching
51 forks
Language: MATLAB
last commit: about 2 months ago
Linked from 1 awesome list
data-integrationenzyme-constraintskineticsmatlabproteomicssystems-biologytoolbox
uhub/awesome-matlabRelated projects:
| Repository | Description | Stars |
|---|---|---|
| sysbiochalmers/yeast-gem | A curated metabolic model of Saccharomyces cerevisiae for systems biology and predictive modeling. | 97 |
 bebop/poly | A comprehensive Go package for computational synthetic biology and gene engineering | 678 |
 jamesjcai/scgeatoolbox | A toolset for analyzing single-cell gene expression data from RNA sequencing experiments. | 24 |
 spatialsimulator/xitosbml | Tool for converting segmented images to spatial SBML models for systems biology simulation | 7 |
 biomodhub/biomod2 | A software framework for ensemble forecasting of species distributions and model calibration in ecology. | 91 |
 teichlab/gpfates | Software to model transcriptional cell fates as mixtures of Gaussian Processes | 19 |
 thalesians/pythalesians | A Python library providing tools and utilities for mathematical modeling, data analysis, and scientific computation. | 61 |
 sylvainschmitt/ssdm | Provides tools for species distribution modeling and stacking of multiple models to assess richness and endemism. | 41 |
 iosr-surrey/matlabtoolbox | A Matlab toolbox providing functions and classes for various signal processing and auditory modelling tasks | 130 |
 lancelafontaine/bioinformatics-compbio-tools | A curated list of useful bioinformatics and computational biology tools, sorted by category. | 49 |
 evoldoers/biomake | Utility for managing builds and complex workflows in bioinformatics | 103 |
 mbb-team/vba-toolbox | A toolbox providing statistical analysis, model simulation, and visualization tools for neurobiological and behavioral data analysis. | 131 |
 senbox-org/s3tbx | A toolbox for processing data from the OLCI and SLSTR instruments on ESA's Sentinel-3 satellite | 46 |
 hollorol/rbbgcmuso | A software package supporting the application of a biogeochemical model in R environment | 22 |
 mrke/nichemapr | An R implementation of biophysical modelling tools for species survival and ecology | 65 |